Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   DZ066_RS03740 Genome accession   NZ_CP031619
Coordinates   692049..692231 (+) Length   60 a.a.
NCBI ID   WP_002986897.1    Uniprot ID   A0A660A6E2
Organism   Streptococcus pyogenes strain MGAS29284     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 649724..692231 692049..692231 within 0


Gene organization within MGE regions


Location: 649724..692231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DZ066_RS03390 (DZ066_03390) - 649724..650821 (-) 1098 WP_032463383.1 site-specific integrase -
  DZ066_RS03395 (DZ066_03395) - 650997..651518 (-) 522 WP_002986895.1 hypothetical protein -
  DZ066_RS03400 (DZ066_03400) - 651529..651909 (-) 381 WP_076634137.1 ImmA/IrrE family metallo-endopeptidase -
  DZ066_RS03405 (DZ066_03405) - 651923..652282 (-) 360 WP_011054768.1 helix-turn-helix transcriptional regulator -
  DZ066_RS03410 (DZ066_03410) - 652701..652796 (-) 96 WP_020837683.1 type I toxin-antitoxin system Fst family toxin -
  DZ066_RS03415 (DZ066_03415) - 653431..653622 (+) 192 WP_002986891.1 hypothetical protein -
  DZ066_RS03420 (DZ066_03420) - 653633..654361 (+) 729 WP_002986890.1 phage antirepressor KilAC domain-containing protein -
  DZ066_RS10075 - 654394..654543 (+) 150 WP_002986888.1 hypothetical protein -
  DZ066_RS03425 (DZ066_03425) - 654540..654740 (-) 201 WP_002986887.1 KTSC domain-containing protein -
  DZ066_RS03430 (DZ066_03430) - 654819..655067 (+) 249 WP_023611035.1 hypothetical protein -
  DZ066_RS03435 (DZ066_03435) - 655041..655256 (-) 216 WP_023611028.1 hypothetical protein -
  DZ066_RS03440 (DZ066_03440) - 655362..655619 (+) 258 WP_032463372.1 hypothetical protein -
  DZ066_RS03445 (DZ066_03445) - 655648..655833 (+) 186 WP_002986881.1 hypothetical protein -
  DZ066_RS03450 (DZ066_03450) - 655927..656184 (+) 258 WP_019418742.1 hypothetical protein -
  DZ066_RS03455 (DZ066_03455) - 656336..656746 (+) 411 WP_172450154.1 DnaD domain protein -
  DZ066_RS03460 (DZ066_03460) - 656727..656939 (+) 213 WP_002986875.1 hypothetical protein -
  DZ066_RS03470 (DZ066_03470) - 657094..657300 (+) 207 WP_002988357.1 hypothetical protein -
  DZ066_RS03475 (DZ066_03475) - 657356..657685 (+) 330 WP_032463369.1 hypothetical protein -
  DZ066_RS03480 (DZ066_03480) - 657688..658614 (+) 927 WP_011054700.1 recombinase RecT -
  DZ066_RS03485 (DZ066_03485) - 658611..658811 (+) 201 WP_000594115.1 hypothetical protein -
  DZ066_RS03490 (DZ066_03490) - 658804..659601 (+) 798 WP_129820724.1 PD-(D/E)XK nuclease-like domain-containing protein -
  DZ066_RS10085 - 659611..659778 (+) 168 WP_009880273.1 hypothetical protein -
  DZ066_RS03495 (DZ066_03495) - 659955..660293 (+) 339 WP_002990067.1 hypothetical protein -
  DZ066_RS03500 (DZ066_03500) - 660290..660802 (+) 513 WP_111695843.1 hypothetical protein -
  DZ066_RS10250 (DZ066_03505) - 660789..660986 (+) 198 WP_011017567.1 hypothetical protein -
  DZ066_RS03510 (DZ066_03510) - 660980..661264 (+) 285 WP_011017568.1 DUF3310 domain-containing protein -
  DZ066_RS03515 (DZ066_03515) - 661261..661530 (+) 270 WP_002987593.1 hypothetical protein -
  DZ066_RS03520 (DZ066_03520) - 661540..661953 (+) 414 WP_032460569.1 YopX family protein -
  DZ066_RS03525 (DZ066_03525) - 661950..662234 (+) 285 WP_032460570.1 hypothetical protein -
  DZ066_RS03530 (DZ066_03530) - 662236..662871 (+) 636 WP_010922070.1 N-6 DNA methylase -
  DZ066_RS03535 (DZ066_03535) - 663138..663575 (+) 438 WP_032460571.1 DUF1492 domain-containing protein -
  DZ066_RS03550 (DZ066_03550) - 664150..664407 (-) 258 WP_011054748.1 hypothetical protein -
  DZ066_RS03555 (DZ066_03555) - 664488..665006 (+) 519 WP_002986854.1 ParB N-terminal domain-containing protein -
  DZ066_RS03560 (DZ066_03560) - 664985..665662 (+) 678 WP_002986850.1 ABC transporter ATP-binding protein -
  DZ066_RS10195 (DZ066_03565) - 665671..666054 (+) 384 WP_076639321.1 GNAT family N-acetyltransferase -
  DZ066_RS03570 (DZ066_03570) - 666115..666492 (+) 378 WP_002986841.1 ASCH domain-containing protein -
  DZ066_RS03575 (DZ066_03575) - 666534..667016 (+) 483 WP_227874485.1 hypothetical protein -
  DZ066_RS03580 (DZ066_03580) - 667099..668310 (+) 1212 WP_010922074.1 PBSX family phage terminase large subunit -
  DZ066_RS03585 (DZ066_03585) - 668324..669826 (+) 1503 WP_002986832.1 phage portal protein -
  DZ066_RS03590 (DZ066_03590) - 669831..671309 (+) 1479 WP_111706023.1 phage minor capsid protein -
  DZ066_RS03595 (DZ066_03595) - 671281..671520 (+) 240 WP_002986829.1 hypothetical protein -
  DZ066_RS03600 (DZ066_03600) - 671582..671848 (+) 267 WP_011054745.1 hypothetical protein -
  DZ066_RS03605 (DZ066_03605) - 671974..672588 (+) 615 WP_011106689.1 hypothetical protein -
  DZ066_RS03610 (DZ066_03610) - 672592..673410 (+) 819 WP_010922080.1 N4-gp56 family major capsid protein -
  DZ066_RS03615 (DZ066_03615) - 673464..673880 (+) 417 WP_111706022.1 hypothetical protein -
  DZ066_RS03620 (DZ066_03620) - 673870..674202 (+) 333 WP_111711003.1 minor capsid protein -
  DZ066_RS03625 (DZ066_03625) - 674202..674558 (+) 357 WP_010922083.1 minor capsid protein -
  DZ066_RS03630 (DZ066_03630) - 674555..674953 (+) 399 WP_011888694.1 minor capsid protein -
  DZ066_RS03635 (DZ066_03635) - 674953..675414 (+) 462 WP_011018120.1 hypothetical protein -
  DZ066_RS03640 (DZ066_03640) - 675458..675892 (+) 435 WP_011888695.1 hypothetical protein -
  DZ066_RS03645 (DZ066_03645) - 675896..676477 (+) 582 WP_111711002.1 bacteriophage Gp15 family protein -
  DZ066_RS03650 (DZ066_03650) - 676467..679727 (+) 3261 WP_111711001.1 tape measure protein -
  DZ066_RS03655 (DZ066_03655) - 679724..680440 (+) 717 WP_111711000.1 distal tail protein Dit -
  DZ066_RS03660 (DZ066_03660) - 680437..682584 (+) 2148 WP_129820725.1 phage tail spike protein -
  DZ066_RS03665 (DZ066_03665) - 682581..683804 (+) 1224 WP_030127718.1 hypothetical protein -
  DZ066_RS03670 (DZ066_03670) - 683806..684120 (+) 315 WP_063812987.1 hypothetical protein -
  DZ066_RS03675 (DZ066_03675) - 684131..686017 (+) 1887 WP_129820726.1 gp58-like family protein -
  DZ066_RS03680 (DZ066_03680) - 686029..686460 (+) 432 WP_002987513.1 DUF1617 family protein -
  DZ066_RS03685 (DZ066_03685) - 686463..687080 (+) 618 WP_032461328.1 DUF1366 domain-containing protein -
  DZ066_RS03690 (DZ066_03690) - 687090..687365 (+) 276 WP_002987582.1 hypothetical protein -
  DZ066_RS03695 (DZ066_03695) - 687362..687589 (+) 228 WP_000609113.1 phage holin -
  DZ066_RS03700 (DZ066_03700) - 687705..688907 (+) 1203 WP_023611747.1 glucosaminidase domain-containing protein -
  DZ066_RS03705 (DZ066_03705) - 689094..689333 (-) 240 WP_003055855.1 hypothetical protein -
  DZ066_RS03710 (DZ066_03710) - 689402..689617 (-) 216 WP_023611751.1 hypothetical protein -
  DZ066_RS03715 (DZ066_03715) - 689619..690221 (-) 603 WP_023611748.1 AP endonuclease -
  DZ066_RS03720 (DZ066_03720) acrIIA3 690221..690595 (-) 375 WP_023611744.1 anti-CRISPR protein AcrIIA3 -
  DZ066_RS03725 (DZ066_03725) - 690728..691084 (-) 357 WP_003055891.1 hypothetical protein -
  DZ066_RS03730 (DZ066_03730) - 691086..691559 (-) 474 WP_076634523.1 hypothetical protein -
  DZ066_RS03735 (DZ066_03735) - 691599..691838 (-) 240 WP_002986898.1 hypothetical protein -
  DZ066_RS03740 (DZ066_03740) prx 692049..692231 (+) 183 WP_002986897.1 hypothetical protein Regulator

Sequence


Protein


Download         Length: 60 a.a.        Molecular weight: 6772.68 Da        Isoelectric Point: 3.9286

>NTDB_id=308100 DZ066_RS03740 WP_002986897.1 692049..692231(+) (prx) [Streptococcus pyogenes strain MGAS29284]
MLTYDEFKQAIDDGYIVGDTVAIVRKNGQIFDYVLPGEKVRPSEVVAEEIVEEVVVELDK

Nucleotide


Download         Length: 183 bp        

>NTDB_id=308100 DZ066_RS03740 WP_002986897.1 692049..692231(+) (prx) [Streptococcus pyogenes strain MGAS29284]
ATGCTAACATACGACGAGTTTAAGCAAGCAATCGATGACGGATATATCGTAGGAGACACAGTAGCGATTGTGCGTAAAAA
CGGACAGATTTTTGATTATGTGTTGCCTGGCGAAAAAGTCAGACCGTCGGAGGTTGTGGCTGAGGAAATAGTGGAAGAGG
TGGTGGTGGAATTAGACAAATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A660A6E2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

98.333

100

0.983

  prx Streptococcus pyogenes MGAS315

81.667

100

0.817

  prx Streptococcus pyogenes MGAS8232

78.333

100

0.783

  prx Streptococcus pyogenes MGAS315

78.333

100

0.783

  prx Streptococcus pyogenes MGAS315

73.333

100

0.733

  prx Streptococcus pyogenes MGAS315

90.244

68.333

0.617

  prx Streptococcus pyogenes MGAS315

82.927

68.333

0.567


Multiple sequence alignment