Detailed information NTG0307939

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: AB849_RS13025
• Genome accession: NZ_CP036487
• Coordinates: 2551924..2552631 (-)
• Length: 235 a.a.
• NCBI ID: WP_037993511.1
• Uniprot ID: -
• Organism: Thermoactinomyces vulgaris strain CDF
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2546924..2557631

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB849_RS12990 (AB849_012990)	-	2546998..2547756 (-)	759	WP_049719904.1	M23 family metallopeptidase	-
AB849_RS12995 (AB849_012995)	minD	2547853..2548647 (-)	795	WP_037993501.1	septum site-determining protein MinD	-
AB849_RS13000 (AB849_013000)	-	2548674..2549354 (-)	681	WP_049719903.1	septum site-determining protein MinC	-
AB849_RS13005 (AB849_013005)	mreD	2549431..2549961 (-)	531	WP_037993505.1	rod shape-determining protein MreD	-
AB849_RS13015 (AB849_013015)	mreC	2549992..2550806 (-)	815	Protein_2560	rod shape-determining protein MreC	-
AB849_RS13020 (AB849_013020)	-	2550822..2551880 (-)	1059	WP_037993509.1	rod shape-determining protein	-
AB849_RS13025 (AB849_013025)	ysxA/radC	2551924..2552631 (-)	708	WP_037993511.1	RadC family protein	Machinery gene
AB849_RS13030 (AB849_013030)	-	2552721..2553320 (-)	600	WP_037993512.1	Maf family protein	-
AB849_RS13035 (AB849_013035)	-	2553517..2554632 (-)	1116	WP_037993514.1	SPOR domain-containing protein	-
AB849_RS13040 (AB849_013040)	-	2554680..2555381 (-)	702	WP_037993517.1	prepilin peptidase	-
AB849_RS13045 (AB849_013045)	pilT	2555374..2555772 (-)	399	WP_084712858.1	ATPase, T2SS/T4P/T4SS family	Machinery gene
AB849_RS13050 (AB849_013050)	pilT	2555775..2556344 (-)	570	WP_165489751.1	ATPase, T2SS/T4P/T4SS family	Machinery gene
AB849_RS13055 (AB849_013055)	pptA	2556510..2557244 (+)	735	WP_049719902.1	ABC transporter ATP-binding protein	Regulator

Sequence

Protein

• Length: 235 a.a.
• Molecular weight: 26398.80 Da
• Isoelectric Point: 6.5866

>NTDB_id=307939 AB849_RS13025 WP_037993511.1 2551924..2552631(-) (ysxA/radC) [Thermoactinomyces vulgaris strain CDF]
MKEPKNSLPMLKDVPEEERPRERMLRFGPEKLSNAELLALLLRTGSTGESVMVLAQRVLSKTGGLKALTQISLQELMQIH
GIGLAKAVQIMAGVELGQRISRLLPEERYAIHSPQDAARYVMEELRFLKQEHFVCLFLNTKYQVIGKQCIFKGSLNASVV
HPREIFHEAIRFSAAAIVCVHNHPSGDPTPSPEDLEVTERLVEAGKLMGIEILDHLIIGDQLYMSMREHGMIPEE

Nucleotide

• Length: 708 bp

>NTDB_id=307939 AB849_RS13025 WP_037993511.1 2551924..2552631(-) (ysxA/radC) [Thermoactinomyces vulgaris strain CDF]
ATGAAGGAACCGAAAAATTCTTTGCCGATGTTAAAAGATGTTCCGGAGGAAGAAAGACCCCGTGAGCGGATGTTGCGCTT
CGGGCCGGAGAAGTTGTCCAATGCGGAGTTGTTGGCTCTTTTGCTTCGGACGGGAAGCACGGGAGAATCGGTCATGGTGC
TGGCGCAACGTGTGTTGAGCAAAACGGGGGGTCTGAAAGCCCTCACACAAATCTCACTCCAAGAATTGATGCAAATTCAT
GGCATCGGCCTTGCCAAAGCCGTGCAAATCATGGCAGGGGTTGAACTCGGGCAACGGATTTCAAGGTTGCTGCCTGAGGA
ACGGTATGCCATACATTCCCCGCAAGATGCTGCCCGCTACGTCATGGAAGAGCTTCGTTTTCTGAAACAGGAACATTTCG
TTTGCCTTTTTTTAAACACCAAGTATCAAGTCATCGGAAAACAGTGCATTTTTAAAGGGAGTTTAAATGCCTCTGTTGTA
CATCCCCGGGAAATCTTCCATGAAGCGATCCGTTTCAGTGCTGCGGCAATCGTTTGTGTACATAATCATCCCAGCGGGGA
CCCGACCCCCAGCCCGGAAGATCTCGAAGTGACGGAGAGGTTGGTGGAAGCAGGGAAATTAATGGGGATTGAAATTCTGG
ATCACCTGATTATCGGGGATCAATTGTATATGAGCATGCGTGAGCACGGCATGATTCCGGAGGAATGA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (12-88)

• RadC-like JAB domain (RadC) (111-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	58.772	97.021	0.57
radC	Streptococcus pneumoniae R6	48.325	88.936	0.43
radC	Streptococcus pneumoniae D39	48.325	88.936	0.43
radC	Streptococcus gordonii str. Challis substr. CH1	47.847	88.936	0.426
radC	Streptococcus pneumoniae TIGR4	47.847	88.936	0.426