Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   AB849_RS13055 Genome accession   NZ_CP036487
Coordinates   2556510..2557244 (+) Length   244 a.a.
NCBI ID   WP_049719902.1    Uniprot ID   -
Organism   Thermoactinomyces vulgaris strain CDF     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2551510..2562244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB849_RS13025 (AB849_013025) ysxA/radC 2551924..2552631 (-) 708 WP_037993511.1 RadC family protein Machinery gene
  AB849_RS13030 (AB849_013030) - 2552721..2553320 (-) 600 WP_037993512.1 Maf family protein -
  AB849_RS13035 (AB849_013035) - 2553517..2554632 (-) 1116 WP_037993514.1 SPOR domain-containing protein -
  AB849_RS13040 (AB849_013040) - 2554680..2555381 (-) 702 WP_037993517.1 prepilin peptidase -
  AB849_RS13045 (AB849_013045) pilT 2555374..2555772 (-) 399 WP_084712858.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  AB849_RS13050 (AB849_013050) pilT 2555775..2556344 (-) 570 WP_165489751.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  AB849_RS13055 (AB849_013055) pptA 2556510..2557244 (+) 735 WP_049719902.1 ABC transporter ATP-binding protein Regulator
  AB849_RS13060 (AB849_013060) - 2557241..2558470 (+) 1230 WP_037993520.1 ABC transporter permease -
  AB849_RS13065 (AB849_013065) - 2558501..2559142 (-) 642 WP_037993522.1 SCO family protein -
  AB849_RS13070 (AB849_013070) murC 2559242..2560627 (-) 1386 WP_037993770.1 UDP-N-acetylmuramate--L-alanine ligase -
  AB849_RS13075 (AB849_013075) - 2560645..2561949 (-) 1305 WP_165489752.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27607.09 Da        Isoelectric Point: 9.3367

>NTDB_id=307942 AB849_RS13055 WP_049719902.1 2556510..2557244(+) (pptA) [Thermoactinomyces vulgaris strain CDF]
MLSVKQLYGGYARQHPVIKNVNFSVKPGEMVGLIGLNGAGKSTTIKNILGLVTPFSGTVTINGHTLSENPKSFRSQLAYI
PETPQFYEELTLWEHLELTAGAYQLSREEFKQRAGALLERFRMNKVKNWFPDNFSKGMQQKIMILCAFLVRPRFLIIDEP
FVGLDPLAIRSLFQLLEEGKKEGMGILMSTHILETAEKHCERFVLLHEGEVRFSGTLSEMNRQAGTRNKALDELFMLAIE
GKRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=307942 AB849_RS13055 WP_049719902.1 2556510..2557244(+) (pptA) [Thermoactinomyces vulgaris strain CDF]
ATGCTTTCAGTCAAACAACTTTACGGTGGATATGCCCGTCAACATCCGGTCATCAAAAATGTCAATTTTTCGGTGAAACC
CGGTGAAATGGTGGGCCTCATCGGATTGAACGGCGCCGGAAAGAGCACCACCATCAAAAATATCCTGGGCCTTGTCACCC
CTTTTTCCGGCACCGTCACCATCAACGGGCACACGTTGTCAGAAAATCCGAAATCGTTCCGGTCCCAACTCGCTTATATC
CCGGAAACCCCGCAATTTTATGAAGAACTCACTTTATGGGAGCACCTGGAACTGACAGCCGGTGCTTATCAATTGTCTCG
GGAAGAGTTTAAACAGCGCGCAGGGGCCTTGCTGGAACGTTTTCGGATGAACAAAGTGAAAAACTGGTTTCCGGACAATT
TTTCCAAAGGAATGCAGCAAAAAATCATGATCTTGTGCGCTTTCTTGGTCCGCCCCCGTTTTTTGATCATTGACGAACCC
TTTGTCGGGTTGGATCCGCTGGCCATCCGTTCTTTGTTCCAATTGTTGGAAGAAGGAAAAAAAGAGGGGATGGGCATTTT
AATGTCCACACACATTTTGGAAACGGCCGAAAAACATTGTGAGCGCTTTGTATTGCTTCATGAAGGCGAAGTGCGCTTCT
CCGGAACCTTGTCCGAGATGAACCGGCAGGCAGGAACCCGAAACAAGGCATTGGATGAATTGTTTATGTTGGCGATAGAA
GGGAAGCGATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(18-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

52.459

100

0.525
  pptA Streptococcus thermophilus LMD-9

51.639

100

0.516