NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	AB849_RS05985	Genome accession	NZ_CP036487
Coordinates	1155548..1156129 (-)	Length	193 a.a.
NCBI ID	WP_037997422.1	Uniprot ID	A0A8I1AD05
Organism	Thermoactinomyces vulgaris strain CDF
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1150548..1161129

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB849_RS05955 (AB849_005955)	rapZ	1151081..1151962 (+)	882	WP_037997447.1	RNase adapter RapZ	-
AB849_RS05960 (AB849_005960)	-	1151983..1152969 (+)	987	WP_037997446.1	gluconeogenesis factor YvcK family protein	-
AB849_RS05965 (AB849_005965)	whiA	1152985..1153911 (+)	927	WP_037997431.1	DNA-binding protein WhiA	-
AB849_RS05970 (AB849_005970)	-	1153928..1154185 (+)	258	WP_037997428.1	HPr family phosphocarrier protein	-
AB849_RS05975 (AB849_005975)	-	1154394..1155047 (+)	654	WP_049720659.1	hypothetical protein	-
AB849_RS05980 (AB849_005980)	-	1155127..1155489 (+)	363	WP_037997424.1	hypothetical protein	-
AB849_RS05985 (AB849_005985)	clpP	1155548..1156129 (-)	582	WP_037997422.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
AB849_RS05990 (AB849_005990)	-	1156542..1157240 (-)	699	WP_049720658.1	creatininase family protein	-
AB849_RS06000 (AB849_006000)	rpoN	1157644..1159005 (+)	1362	WP_049720657.1	RNA polymerase factor sigma-54	-
AB849_RS06005 (AB849_006005)	-	1159156..1160178 (+)	1023	WP_037996115.1	sugar-binding transcriptional regulator	-

Sequence

Protein

Download Length: 193 a.a. Molecular weight: 21497.87 Da Isoelectric Point: 6.2555

                                >NTDB_id=307906 AB849_RS05985 WP_037997422.1 1155548..1156129(-) (clpP) [Thermoactinomyces vulgaris strain CDF]

MNLIPMVVEQTNRGERSYDIYSRLLKDRIILLGSPVTDEVANLIVAQLLFLEAEDPEKDIHLYINSPGGSITAGMAIYDA

MQYVKPDVSTICVGLAASMGAFLLAAGKKGKRFALPNSEVMIHQPLGGAQGQASDIEIRAKRILRTRDRLNKLLSEFTGQ

PLEKIERDTDRDYFMSAEEALKYGLIDQVMKHK

Nucleotide

Download Length: 582 bp

                                >NTDB_id=307906 AB849_RS05985 WP_037997422.1 1155548..1156129(-) (clpP) [Thermoactinomyces vulgaris strain CDF]

ATGAATCTAATCCCAATGGTTGTGGAACAAACCAATCGCGGTGAACGTTCCTATGATATTTATTCCCGCCTTTTGAAAGA

CCGGATTATTTTGCTGGGAAGCCCGGTGACCGACGAAGTCGCCAACTTAATCGTGGCCCAGCTTCTCTTTTTGGAAGCCG

AAGACCCGGAAAAGGACATCCATCTGTACATCAACTCGCCAGGCGGCTCCATCACCGCGGGAATGGCCATTTATGATGCC

ATGCAATACGTCAAACCGGATGTCTCCACCATCTGCGTGGGATTGGCCGCATCCATGGGCGCATTCCTGCTGGCCGCCGG

AAAAAAAGGAAAACGGTTTGCCCTTCCCAACAGCGAGGTCATGATCCATCAGCCACTGGGCGGGGCGCAAGGCCAGGCTT

CCGACATAGAAATCCGGGCGAAACGAATTTTGCGGACCAGAGACCGCTTGAACAAGCTGCTCTCCGAATTCACCGGGCAA

CCGTTGGAAAAAATTGAACGGGACACCGACCGCGATTACTTTATGAGTGCGGAAGAAGCACTGAAATACGGTTTGATCGA

CCAAGTCATGAAACACAAATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A8I1AD05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	80.208	99.482	0.798
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.254	97.927	0.668
clpP	Streptococcus mutans UA159	57.513	100	0.575
clpP	Streptococcus pneumoniae R6	56.477	100	0.565
clpP	Streptococcus pneumoniae Rx1	56.477	100	0.565
clpP	Streptococcus pneumoniae D39	56.477	100	0.565
clpP	Streptococcus pneumoniae TIGR4	56.477	100	0.565
clpP	Streptococcus pyogenes JRS4	56.477	100	0.565
clpP	Streptococcus pyogenes MGAS315	56.477	100	0.565
clpP	Lactococcus lactis subsp. cremoris KW2	55.959	100	0.56
clpP	Streptococcus thermophilus LMG 18311	55.959	100	0.56
clpP	Streptococcus thermophilus LMD-9	55.959	100	0.56
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	53.886	100	0.539

Detailed information NTG0307906