Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   L3107_RS03195 Genome accession   NZ_CP031538
Coordinates   623677..624276 (-) Length   199 a.a.
NCBI ID   WP_064305133.1    Uniprot ID   -
Organism   Lactococcus cremoris strain 3107     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 618677..629276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3107_RS03185 (L3107_0599) acnA 619833..622379 (+) 2547 WP_064305132.1 aconitate hydratase AcnA -
  L3107_RS03190 (L3107_0600) icd 622399..623637 (+) 1239 Protein_604 NADP-dependent isocitrate dehydrogenase -
  L3107_RS03195 (L3107_0601) clpP 623677..624276 (-) 600 WP_064305133.1 ATP-dependent Clp protease proteolytic subunit Regulator
  L3107_RS03200 (L3107_0602) - 624472..625002 (+) 531 WP_011675638.1 hypothetical protein -
  L3107_RS03205 (L3107_0603) spx 625172..625570 (+) 399 WP_003129597.1 transcriptional regulator Spx -
  L3107_RS13915 (L3107_0604) - 625721..625855 (-) 135 WP_014572996.1 hypothetical protein -
  L3107_RS03210 (L3107_0605) - 625952..627115 (-) 1164 WP_011675640.1 ABC transporter permease -
  L3107_RS03215 (L3107_0606) istB 627206..627964 (-) 759 WP_015081777.1 IS21-like element IS712 family helper ATPase IstB -
  L3107_RS03220 (L3107_0607) istA 627976..629199 (-) 1224 WP_064305106.1 IS21-like element IS712 family transposase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22064.27 Da        Isoelectric Point: 4.7423

>NTDB_id=307347 L3107_RS03195 WP_064305133.1 623677..624276(-) (clpP) [Lactococcus cremoris strain 3107]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKIRKRLEQILADN
SNRSLEQIHKDAERDHWMDAKETLEYGFIDEIMENNSLK

Nucleotide


Download         Length: 600 bp        

>NTDB_id=307347 L3107_RS03195 WP_064305133.1 623677..624276(-) (clpP) [Lactococcus cremoris strain 3107]
ATGGGTTATTTAGTACCTACCGTTATTGAACAATCAAGCCGTGGTGAACGTGCTTATGATATTTATTCACGACTTTTAAA
AGACCGTATTATCATGCTGACAGGACCTGTTGAAGATGGTATGGCAAATTCTATCATTGCCCAACTTCTTTTCTTGGATG
CACAAGATAATACTAAAGACATTTATCTCTATGTAAACACCCCTGGTGGTTCTGTATCAGCTGGGCTCGCTATCGTGGAT
ACAATGAACTTTATCAAATCGGATGTCCAAACTATCGTTATGGGAATGGCTGCTTCTATGGGAACAATCATCGCCTCAAG
CGGTACTAAGGGTAAACGATTCATGTTACCAAATGCTGAATACCTCATTCACCAACCAATGGGTGGTGCAGGTCAAGGTA
CTCAACAAACTGATATGGCAATCGTCGCCGAACAACTTTTGAAAATACGTAAACGTTTGGAACAAATCCTTGCTGATAAT
TCTAATCGCTCACTTGAACAAATTCACAAAGATGCTGAACGTGACCATTGGATGGATGCCAAAGAAACTTTAGAATATGG
TTTCATTGATGAAATTATGGAAAATAATTCATTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

99.497

100

0.995
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

98.995

100

0.99
  clpP Streptococcus mutans UA159

86.735

98.492

0.854
  clpP Streptococcus thermophilus LMD-9

86.224

98.492

0.849
  clpP Streptococcus thermophilus LMG 18311

86.224

98.492

0.849
  clpP Streptococcus pyogenes MGAS315

85.204

98.492

0.839
  clpP Streptococcus pyogenes JRS4

85.204

98.492

0.839
  clpP Streptococcus pneumoniae D39

84.103

97.99

0.824
  clpP Streptococcus pneumoniae TIGR4

84.103

97.99

0.824
  clpP Streptococcus pneumoniae R6

84.103

97.99

0.824
  clpP Streptococcus pneumoniae Rx1

84.103

97.99

0.824
  clpP Bacillus subtilis subsp. subtilis str. 168

57.895

95.477

0.553
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.995

96.985

0.553

Multiple sequence alignment