Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DVV14_RS12345 Genome accession   NZ_CP031472
Coordinates   2665507..2666622 (+) Length   371 a.a.
NCBI ID   WP_064488901.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain RE22     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2660507..2671622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVV14_RS12325 (DVV14_12385) trkA 2661003..2662379 (-) 1377 WP_006957511.1 Trk system potassium transporter TrkA -
  DVV14_RS12330 (DVV14_12390) rsmB 2662429..2663709 (-) 1281 WP_064488903.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  DVV14_RS12335 (DVV14_12395) fmt 2663766..2664713 (-) 948 WP_064488902.1 methionyl-tRNA formyltransferase -
  DVV14_RS12340 (DVV14_12400) def 2664736..2665257 (-) 522 WP_006957514.1 peptide deformylase -
  DVV14_RS12345 (DVV14_12405) dprA 2665507..2666622 (+) 1116 WP_064488901.1 DNA-processing protein DprA Machinery gene
  DVV14_RS12350 (DVV14_12410) - 2666625..2667104 (+) 480 WP_006957516.1 DUF494 family protein -
  DVV14_RS12355 (DVV14_12415) - 2667120..2667704 (+) 585 WP_064488900.1 type I DNA topoisomerase -
  DVV14_RS12360 (DVV14_12420) - 2667754..2668887 (-) 1134 WP_064488899.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  DVV14_RS12365 (DVV14_12425) purE 2668892..2669377 (-) 486 WP_006957519.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  DVV14_RS12370 (DVV14_12430) - 2669574..2670131 (+) 558 WP_038514161.1 L-threonylcarbamoyladenylate synthase -
  DVV14_RS12375 (DVV14_12435) hemF 2670153..2671070 (+) 918 WP_064488898.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40316.98 Da        Isoelectric Point: 6.2776

>NTDB_id=307063 DVV14_RS12345 WP_064488901.1 2665507..2666622(+) (dprA) [Vibrio coralliilyticus strain RE22]
MTKEELSAWLSLYFTPRIGPKTFQRLVAVDSPINIIDSSPETLRCLGFSDSQLNYLQHRAAEDIEACFEWQAESSARTIL
PLSDQHYPALLKQADAAPATLFVEGHPESLSQPQMAIVGSRNASIDGLNTARSFATQLVNQDMVVTSGLALGVDGYAHDG
ALNGNGQTIAVLGCGLNSVYPARHKKLAQRIVQQGALVSEFHPNVKPKADNFPRRNRIISGLSLGVLVIEAAEKSGSLIT
ARYAMEQGREVFAIPGSIHHPHARGCNLLIKQGACLVQQVSDITDEIDSLIRWSDVNKPLVQSDLFEQIDCKEELPFPQL
LANVGSKATPVDILASRTNIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=307063 DVV14_RS12345 WP_064488901.1 2665507..2666622(+) (dprA) [Vibrio coralliilyticus strain RE22]
ATGACGAAAGAAGAACTGTCGGCTTGGCTGAGCTTGTACTTTACGCCGCGGATTGGGCCAAAAACGTTTCAGCGTCTGGT
GGCGGTAGATTCTCCAATCAACATCATTGACTCTTCACCCGAGACATTACGCTGTTTAGGTTTTTCCGACTCGCAACTGA
ATTATCTCCAACACCGAGCTGCGGAGGATATTGAGGCGTGTTTCGAGTGGCAAGCAGAATCAAGTGCCAGAACCATTCTA
CCTTTGAGTGATCAGCATTATCCGGCACTACTGAAACAGGCTGACGCTGCGCCAGCAACACTGTTTGTTGAAGGTCACCC
AGAGAGCCTGTCTCAGCCACAAATGGCGATTGTGGGCAGTCGCAATGCCAGTATTGATGGGCTTAACACCGCACGCAGCT
TTGCGACCCAACTGGTGAATCAAGACATGGTCGTGACCAGCGGCTTGGCATTAGGTGTTGATGGTTATGCCCATGATGGG
GCTCTCAATGGTAATGGCCAAACCATCGCCGTGCTCGGTTGTGGTTTAAATTCTGTGTATCCGGCACGGCATAAGAAGTT
GGCTCAACGAATCGTTCAACAAGGGGCGTTGGTGTCTGAGTTCCATCCTAATGTGAAGCCAAAAGCCGATAATTTTCCAC
GCCGAAATCGAATCATTAGTGGTCTATCACTGGGCGTTTTAGTCATAGAAGCGGCAGAGAAAAGTGGCTCTCTGATCACC
GCTCGCTATGCGATGGAGCAAGGTCGCGAAGTGTTTGCGATTCCCGGCTCGATTCATCATCCCCATGCGAGAGGTTGTAA
CCTGTTGATAAAACAGGGTGCGTGTCTGGTTCAGCAGGTTTCTGACATCACCGATGAAATTGACAGTCTGATTCGCTGGT
CTGATGTTAATAAGCCGCTAGTGCAAAGCGATCTATTTGAACAAATTGATTGCAAAGAAGAATTGCCATTTCCTCAGCTG
TTAGCTAACGTAGGAAGTAAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTGCATGAAGTCATGAT
GCAGCTCTTGGAGCTTGAGCTCTCAGGGCATGTTGTTGCGGTTTCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

63.215

98.922

0.625
  dprA Vibrio cholerae strain A1552

57.682

100

0.577
  dprA Glaesserella parasuis strain SC1401

45.213

100

0.458
  dprA Legionella pneumophila strain ERS1305867

43.526

97.844

0.426
  dprA Neisseria meningitidis MC58

37.783

100

0.404
  dprA Neisseria meningitidis strain C311

37.783

100

0.404
  dprA Haemophilus influenzae Rd KW20

40.816

92.453

0.377
  dprA Acinetobacter baumannii D1279779

39.881

90.566

0.361

Multiple sequence alignment