Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | DYB08_RS19300 | Genome accession | NZ_CP031444 |
| Coordinates | 3923790..3924170 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain MDR-UNC | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3918790..3929170
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DYB08_RS19270 (DYB08_19280) | kdsB | 3919693..3920454 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| DYB08_RS19275 (DYB08_19285) | - | 3920466..3921446 (+) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| DYB08_RS19280 (DYB08_19290) | - | 3921458..3921799 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| DYB08_RS19285 (DYB08_19295) | - | 3921817..3922590 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| DYB08_RS19290 (DYB08_19300) | - | 3922628..3923236 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| DYB08_RS19295 (DYB08_19305) | - | 3923246..3923800 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| DYB08_RS19300 (DYB08_19310) | xcpV | 3923790..3924170 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| DYB08_RS19305 (DYB08_19315) | xcpW | 3924170..3924871 (+) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| DYB08_RS19310 (DYB08_19320) | gspK | 3924871..3925830 (+) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| DYB08_RS19315 (DYB08_19325) | - | 3926061..3926657 (+) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| DYB08_RS19320 (DYB08_19330) | ung | 3926708..3927421 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| DYB08_RS19325 (DYB08_19335) | - | 3927418..3928542 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| DYB08_RS19330 (DYB08_19340) | tadA | 3928549..3929052 (+) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=306772 DYB08_RS19300 WP_000836911.1 3923790..3924170(+) (xcpV) [Acinetobacter baumannii strain MDR-UNC]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=306772 DYB08_RS19300 WP_000836911.1 3923790..3924170(+) (xcpV) [Acinetobacter baumannii strain MDR-UNC]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |