Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   SDEG_RS05420 Genome accession   NC_012891
Coordinates   1081810..1081998 (-) Length   62 a.a.
NCBI ID   WP_012767008.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1076810..1086998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS05400 (SDEG_1097) - 1078602..1078973 (+) 372 WP_003053565.1 GntR family transcriptional regulator -
  SDEG_RS05405 (SDEG_1098) - 1078973..1079671 (+) 699 WP_012767007.1 ABC transporter ATP-binding protein -
  SDEG_RS05410 (SDEG_1099) - 1079681..1080469 (+) 789 WP_003053541.1 hypothetical protein -
  SDEG_RS05415 (SDEG_1100) - 1080605..1081219 (-) 615 WP_003053567.1 TVP38/TMEM64 family protein -
  SDEG_RS05420 (SDEG_1102) prx 1081810..1081998 (-) 189 WP_012767008.1 hypothetical protein Regulator
  SDEG_RS05425 (SDEG_1103) - 1082231..1083220 (+) 990 WP_050443212.1 DNA/RNA non-specific endonuclease -
  SDEG_RS05430 (SDEG_1104) - 1083282..1083482 (-) 201 WP_011888781.1 CsbD family protein -
  SDEG_RS05435 (SDEG_1105) - 1083671..1084183 (-) 513 WP_012767010.1 PBECR4 domain-containing protein -
  SDEG_RS05440 (SDEG_1106) - 1084580..1085782 (-) 1203 WP_012767011.1 glucosaminidase domain-containing protein -
  SDEG_RS11430 (SDEG_1107) - 1085770..1085892 (-) 123 WP_012767012.1 hypothetical protein -
  SDEG_RS05450 (SDEG_1108) - 1085894..1086349 (-) 456 WP_012767013.1 phage holin family protein -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7439.33 Da        Isoelectric Point: 4.1958

>NTDB_id=30677 SDEG_RS05420 WP_012767008.1 1081810..1081998(-) (prx) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MLTYDEFKQAIDDRYITGHTVAIVRKNGQIFDYVLSNEKIRDWEVVTEERVEDVLDELDYIK

Nucleotide


Download         Length: 189 bp        

>NTDB_id=30677 SDEG_RS05420 WP_012767008.1 1081810..1081998(-) (prx) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGCTAACATACGATGAGTTTAAGCAAGCTATTGATGACAGATATATCACAGGACATACAGTGGCGATCGTGCGCAAAAA
CGGACAGATTTTTGATTATGTGTTGTCGAATGAGAAGATAAGAGATTGGGAGGTTGTGACAGAGGAGAGAGTAGAAGATG
TTTTGGATGAATTAGACTATATTAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

77.419

100

0.774
  prx Streptococcus pyogenes MGAS315

79.661

95.161

0.758
  prx Streptococcus pyogenes MGAS315

75.862

93.548

0.71
  prx Streptococcus pyogenes MGAS8232

74.138

93.548

0.694
  prx Streptococcus pyogenes MGAS315

71.186

95.161

0.677
  prx Streptococcus pyogenes MGAS315

82.927

66.129

0.548
  prx Streptococcus pyogenes MGAS315

73.81

67.742

0.5