Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DV114_RS01110 Genome accession   NZ_CP031251
Coordinates   213412..214908 (-) Length   498 a.a.
NCBI ID   WP_101755250.1    Uniprot ID   -
Organism   Neisseria subflava strain M18660     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 208412..219908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS01085 comE 209631..209918 (+) 288 WP_004520163.1 helix-hairpin-helix domain-containing protein Machinery gene
  DV114_RS01090 comP 210101..210595 (+) 495 WP_199903543.1 type IV pilin protein Machinery gene
  DV114_RS01095 - 210668..211492 (-) 825 WP_101755248.1 undecaprenyl-diphosphate phosphatase -
  DV114_RS01100 dsbA1 211537..212178 (-) 642 WP_101755418.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  DV114_RS01105 - 212190..213257 (-) 1068 WP_101755249.1 SPOR domain-containing protein -
  DV114_RS01110 comM 213412..214908 (-) 1497 WP_101755250.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DV114_RS01115 - 214922..215242 (-) 321 WP_101755251.1 accessory factor UbiK family protein -
  DV114_RS01120 metK 215352..216521 (-) 1170 WP_049351011.1 methionine adenosyltransferase -
  DV114_RS01130 - 216914..217792 (+) 879 WP_070625949.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53937.98 Da        Isoelectric Point: 7.5739

>NTDB_id=304971 DV114_RS01110 WP_101755250.1 213412..214908(-) (comM) [Neisseria subflava strain M18660]
MSLALVYSRALSGMNAPVVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGILTASGQINPEKLSQYEFAGELALSGLLRPVRGALAMAWQGMQAGRSFVLPQENAEQTAVMRGIAVYGARSL
GEVAAHLNGIEPLTQTECKLPQRPSEQSKIPDLADVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASSAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPSKPCRCTPESVARYRNKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSATVLERVTVARKIQYNRQGKVNAELSVSELDSKARIQKEAQEALGTMLEKLSLSARSFHRIMRVARTLADLAGD
EEVSKTHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=304971 DV114_RS01110 WP_101755250.1 213412..214908(-) (comM) [Neisseria subflava strain M18660]
ATGTCGCTTGCTTTGGTTTACAGCCGCGCCTTAAGCGGCATGAATGCGCCGGTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCTTGCCACATTTCAATATCGTCGGTTTGCCCGATACTGAAGTCAAAGAAAGCCGCGACCGTGTGCGTGCCGCCATTA
TCCAAAGCGGCTTCGACTTTCCCGCCAAGAAAATTACCGTCAACCTCGCACCGGCCGACCTCCCAAAAGAATCCGGCCGT
TTCGATTTGCCGATTGCCTTAGGCATTCTTACCGCATCGGGACAAATCAATCCTGAAAAGCTCTCCCAATATGAGTTTGC
CGGAGAATTGGCGCTATCCGGCCTGCTGCGTCCCGTGCGCGGCGCACTGGCCATGGCATGGCAGGGAATGCAGGCAGGCC
GTTCGTTCGTATTGCCGCAAGAAAACGCCGAACAGACTGCCGTTATGCGCGGTATCGCGGTTTATGGAGCGCGTTCTTTG
GGCGAAGTGGCCGCCCATTTAAACGGCATCGAACCGTTGACACAAACCGAATGCAAACTGCCACAAAGGCCGTCTGAACA
AAGTAAAATTCCTGATTTAGCCGATGTTAAAGGCCAGCATACCGCTCGCCTTGCTTTGGAAATCGCAGCGGCAGGCGGAC
ACAGCCTGCTGATGATGGGTCCGCCGGGTACAGGCAAATCCATGCTTTCGCAACGTTTGCCCGGTATCCTTCCGCCTTTG
ACCGAAGATGAATTGGTCGAAGTATGGGCATTGCGTTCTCTCCTGCCCAACCATCAACAGCAACTCGACAGCAACCGTCC
TTTCCGCAGCCCTCATCACAGTGCCAGCTCGGCTGCCATGGTGGGTGGCGGTTCAGACCCACGTCCGGGCGAAATTTCAT
TGGCGCATCACGGTGTGTTGTTTTTAGACGAATTGCCCGAGTTTGACCGTAAAGTATTAGAAGTGTTGCGCGAACCTTTG
GAAAACGGCGAAATCCATATTTCCCGCGCCGCACGCCAAGCAGTTTATCCGGCCAAGTTCCAACTTGTCGCCGCCATGAA
CCCCTGCCCTTGCGGCTATCTTGGCCATCCGTCCAAACCTTGCCGTTGCACGCCTGAAAGTGTTGCCCGCTATCGCAACA
AAATTTCAGGGCCATTGCTCGACCGTATTGATTTAACCATCGAAGTACCCAGCCTTTCCGCTGCCGAGCTGATGCAACAA
GAAGCAGGCGAATCCAGTGCCACCGTATTGGAACGCGTTACCGTCGCACGCAAAATCCAATACAACCGACAAGGCAAAGT
CAATGCCGAACTGAGTGTCAGCGAGCTCGATAGCAAAGCCCGTATTCAAAAAGAAGCGCAAGAAGCCTTGGGAACCATGC
TCGAAAAACTATCCCTTTCCGCCCGAAGTTTCCACCGCATCATGCGCGTCGCCCGTACGCTGGCCGATTTGGCAGGGGAC
GAAGAAGTCAGCAAAACCCATGTGATGAAAGCCATAGGCTTCCGTCGCGCCCTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.59

100

0.53
  comM Vibrio campbellii strain DS40M4

51.509

99.799

0.514
  comM Haemophilus influenzae Rd KW20

49.299

100

0.494
  comM Glaesserella parasuis strain SC1401

49.004

100

0.494
  comM Legionella pneumophila str. Paris

46.535

100

0.472
  comM Legionella pneumophila strain ERS1305867

46.535

100

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.34

100

0.438

Multiple sequence alignment