Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   DV114_RS01100 Genome accession   NZ_CP031251
Coordinates   211537..212178 (-) Length   213 a.a.
NCBI ID   WP_101755418.1    Uniprot ID   -
Organism   Neisseria subflava strain M18660     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 206537..217178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS01085 comE 209631..209918 (+) 288 WP_004520163.1 helix-hairpin-helix domain-containing protein Machinery gene
  DV114_RS01090 comP 210101..210595 (+) 495 WP_199903543.1 type IV pilin protein Machinery gene
  DV114_RS01095 - 210668..211492 (-) 825 WP_101755248.1 undecaprenyl-diphosphate phosphatase -
  DV114_RS01100 dsbA1 211537..212178 (-) 642 WP_101755418.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  DV114_RS01105 - 212190..213257 (-) 1068 WP_101755249.1 SPOR domain-containing protein -
  DV114_RS01110 comM 213412..214908 (-) 1497 WP_101755250.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DV114_RS01115 - 214922..215242 (-) 321 WP_101755251.1 accessory factor UbiK family protein -
  DV114_RS01120 metK 215352..216521 (-) 1170 WP_049351011.1 methionine adenosyltransferase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23794.63 Da        Isoelectric Point: 9.9901

>NTDB_id=304970 DV114_RS01100 WP_101755418.1 211537..212178(-) (dsbA1) [Neisseria subflava strain M18660]
MKQRIKQTIAALSLSLLSLSAQAATEGVDYTVLSRPIPQQQAGKIEVLEFFGYFCVHCYHLDPVLLQHSKTFAKDVSLRT
EHVVWMPEMLGLAKVAAAVNLSGLKYQANPVIFKAVYEQKINLADTNVFRSWVGKQTSFDSKKLLQAYNNPAAASAAAKM
QQLTETYRIENTPTVIVGGKYKVNFNGTDWKVGMKTIDELIIKVRREQSSKPL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=304970 DV114_RS01100 WP_101755418.1 211537..212178(-) (dsbA1) [Neisseria subflava strain M18660]
ATGAAGCAGCGTATAAAACAAACCATTGCCGCACTCAGCCTGAGCCTGCTCAGTCTGAGTGCGCAGGCTGCTACCGAAGG
CGTGGACTATACTGTTCTTAGTCGTCCTATCCCGCAGCAACAAGCCGGAAAAATTGAAGTGCTTGAGTTTTTCGGCTACT
TCTGCGTTCATTGTTACCATCTCGATCCGGTTTTGTTGCAACACAGTAAAACCTTCGCTAAAGATGTTTCCTTACGGACA
GAGCACGTCGTTTGGATGCCTGAAATGTTGGGTTTGGCCAAGGTTGCCGCAGCCGTCAATCTTTCAGGTTTGAAATATCA
AGCCAATCCAGTCATCTTCAAAGCAGTTTACGAACAAAAAATTAACCTGGCCGATACCAATGTATTCCGATCGTGGGTGG
GTAAACAAACGAGTTTTGATAGTAAAAAACTGCTTCAAGCCTACAACAATCCTGCTGCCGCATCGGCTGCTGCAAAAATG
CAGCAATTGACGGAAACTTATCGAATTGAAAACACACCAACTGTCATCGTCGGTGGTAAATACAAAGTCAATTTCAACGG
TACCGACTGGAAAGTCGGTATGAAAACCATAGACGAGCTCATCATCAAAGTCCGCCGCGAACAATCCTCAAAACCACTTT
AA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(44-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

59.358

87.793

0.521
  dsbA2 Neisseria meningitidis MC58

59.563

85.915

0.512

Multiple sequence alignment