Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | DV389_RS04525 | Genome accession | NZ_CP031250 |
| Coordinates | 914918..915367 (-) | Length | 149 a.a. |
| NCBI ID | WP_114893221.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain M21384 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 909918..920367
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DV389_RS04505 (DV389_04505) | rho | 910302..911564 (+) | 1263 | WP_005648966.1 | transcription termination factor Rho | - |
| DV389_RS04510 (DV389_04510) | - | 911618..912310 (-) | 693 | Protein_852 | A24 family peptidase | - |
| DV389_RS04515 (DV389_04515) | pilC | 912307..913527 (-) | 1221 | WP_114893220.1 | type II secretion system F family protein | Machinery gene |
| DV389_RS04520 (DV389_04520) | - | 913524..914921 (-) | 1398 | Protein_854 | GspE/PulE family protein | - |
| DV389_RS04525 (DV389_04525) | pilA | 914918..915367 (-) | 450 | WP_114893221.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| DV389_RS04530 (DV389_04530) | ampD | 915481..916035 (+) | 555 | WP_114893222.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| DV389_RS04535 (DV389_04535) | corC | 916669..917568 (+) | 900 | WP_005662987.1 | CNNM family magnesium/cobalt transport protein CorC | - |
| DV389_RS04540 (DV389_04540) | lnt | 917591..919120 (+) | 1530 | WP_114893223.1 | apolipoprotein N-acyltransferase | - |
| DV389_RS04545 (DV389_04545) | rsmE | 919170..919907 (+) | 738 | WP_114893224.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15474.74 Da Isoelectric Point: 8.4623
>NTDB_id=304957 DV389_RS04525 WP_114893221.1 914918..915367(-) (pilA) [Haemophilus influenzae strain M21384]
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTGKPSTCSGGSNGIA
ADITTAKGYVKSVTTSNGAITVAGNGTLDRMNYTLTAEGDSAKGVTWTTTCKGTDASLFPANFCGSVTQ
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTGKPSTCSGGSNGIA
ADITTAKGYVKSVTTSNGAITVAGNGTLDRMNYTLTAEGDSAKGVTWTTTCKGTDASLFPANFCGSVTQ
Nucleotide
Download Length: 450 bp
>NTDB_id=304957 DV389_RS04525 WP_114893221.1 914918..915367(-) (pilA) [Haemophilus influenzae strain M21384]
ATGAAATTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACCATCGCAATTCCTTCTTATCAAAATTATACCAAAAAAGCTGCGGTATCCGAATTACTGCAAGCTTCTGCGC
CTTATAAGGCTGATGTGGAATTATGCGTTTATAGCACAGGCAAACCTTCTACTTGCTCAGGAGGAAGCAATGGAATTGCA
GCTGATATTACAACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAGCTGGTAATGGTAC
ATTAGATAGAATGAATTACACGCTCACGGCTGAAGGCGATAGTGCAAAAGGTGTAACTTGGACAACAACCTGCAAAGGAA
CAGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA
ATGAAATTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACCATCGCAATTCCTTCTTATCAAAATTATACCAAAAAAGCTGCGGTATCCGAATTACTGCAAGCTTCTGCGC
CTTATAAGGCTGATGTGGAATTATGCGTTTATAGCACAGGCAAACCTTCTACTTGCTCAGGAGGAAGCAATGGAATTGCA
GCTGATATTACAACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAGCTGGTAATGGTAC
ATTAGATAGAATGAATTACACGCTCACGGCTGAAGGCGATAGTGCAAAAGGTGTAACTTGGACAACAACCTGCAAAGGAA
CAGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
87.919 |
100 |
0.879 |
| pilA | Haemophilus influenzae Rd KW20 |
83.221 |
100 |
0.832 |
| pilA | Glaesserella parasuis strain SC1401 |
58.389 |
100 |
0.584 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
41.216 |
99.329 |
0.409 |
| pilA2 | Legionella pneumophila str. Paris |
41.216 |
99.329 |
0.409 |
| comP | Acinetobacter baylyi ADP1 |
37.671 |
97.987 |
0.369 |