Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DV390_RS06535 Genome accession   NZ_CP031242
Coordinates   1320157..1320954 (+) Length   265 a.a.
NCBI ID   WP_013527435.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M21460     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1315157..1325954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV390_RS06515 recR 1315331..1315933 (-) 603 WP_005626527.1 recombination mediator RecR -
  DV390_RS06520 - 1316064..1316393 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  DV390_RS06525 - 1316546..1317391 (-) 846 WP_005691388.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  DV390_RS06530 - 1317464..1320058 (-) 2595 WP_042611819.1 penicillin-binding protein 1A -
  DV390_RS06535 comA 1320157..1320954 (+) 798 WP_013527435.1 pilus assembly protein PilM Machinery gene
  DV390_RS06540 comB 1320955..1321461 (+) 507 WP_038439363.1 competence protein ComB Machinery gene
  DV390_RS06545 comC 1321458..1321979 (+) 522 WP_005662592.1 competence protein ComC Machinery gene
  DV390_RS06550 comD 1321976..1322389 (+) 414 WP_042594787.1 pilus assembly protein PilP Machinery gene
  DV390_RS06555 comE 1322399..1323736 (+) 1338 WP_042594789.1 type IV pilus secretin PilQ family protein Machinery gene
  DV390_RS06560 - 1323749..1324435 (+) 687 WP_042594791.1 ComF family protein -
  DV390_RS06565 nfuA 1324511..1325107 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31571.97 Da        Isoelectric Point: 6.2348

>NTDB_id=304537 DV390_RS06535 WP_013527435.1 1320157..1320954(+) (comA) [Haemophilus influenzae strain M21460]
MQFSLKNYRTLQIGIHRKQSYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSTAQTYLQDFQPFKINVLDVASNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLLENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=304537 DV390_RS06535 WP_013527435.1 1320157..1320954(+) (comA) [Haemophilus influenzae strain M21460]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGAGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAACAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCCCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCATCAAATGCTGTTTTGCGTGCA
TTTCAATATTTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACGCCATTACTAGAAAATTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCGCTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGGGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

98.491

100

0.985
  comA Haemophilus influenzae 86-028NP

96.981

100

0.97

Multiple sequence alignment