Detailed information NTG0303536

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: BLDA23_RS09985
• Genome accession: NZ_CP031126
• Coordinates: 1917195..1917974 (+)
• Length: 259 a.a.
• NCBI ID: WP_003181756.1
• Uniprot ID: A0A1Y0YKK2
• Organism: Bacillus licheniformis strain 0DA23-1
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1912195..1922974

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BLDA23_RS09965 (BLDA23_09965)	trmFO	1912892..1914196 (+)	1305	WP_003181748.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
BLDA23_RS09970 (BLDA23_09970)	xerC	1914263..1915177 (+)	915	WP_003181750.1	tyrosine recombinase XerC	-
BLDA23_RS09975 (BLDA23_09975)	hslV	1915191..1915736 (+)	546	WP_003181752.1	ATP-dependent protease subunit HslV	-
BLDA23_RS09980 (BLDA23_09980)	hslU	1915744..1917156 (+)	1413	WP_254926368.1	HslU--HslV peptidase ATPase subunit	-
BLDA23_RS09985 (BLDA23_09985)	codY	1917195..1917974 (+)	780	WP_003181756.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
BLDA23_RS09990 (BLDA23_09990)	flgB	1918328..1918717 (+)	390	WP_003181758.1	flagellar basal body rod protein FlgB	-
BLDA23_RS09995 (BLDA23_09995)	flgC	1918717..1919169 (+)	453	WP_009328519.1	flagellar basal body rod protein FlgC	-
BLDA23_RS10000 (BLDA23_10000)	fliE	1919183..1919500 (+)	318	WP_003181764.1	flagellar hook-basal body complex protein FliE	-
BLDA23_RS10005 (BLDA23_10005)	fliF	1919551..1921152 (+)	1602	WP_003181766.1	flagellar basal-body MS-ring/collar protein FliF	-
BLDA23_RS10010 (BLDA23_10010)	fliG	1921166..1922182 (+)	1017	WP_003181768.1	flagellar motor switch protein FliG	-
BLDA23_RS10015 (BLDA23_10015)	fliH	1922166..1922933 (+)	768	WP_016885763.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29073.42 Da
• Isoelectric Point: 4.8196

>NTDB_id=303536 BLDA23_RS09985 WP_003181756.1 1917195..1917974(+) (codY) [Bacillus licheniformis strain 0DA23-1]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=303536 BLDA23_RS09985 WP_003181756.1 1917195..1917974(+) (codY) [Bacillus licheniformis strain 0DA23-1]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: A0A1Y0YKK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	94.595	100	0.946
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467