Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | SWOO_RS01610 | Genome accession | NC_010506 |
| Coordinates | 385999..387261 (-) | Length | 420 a.a. |
| NCBI ID | WP_012322962.1 | Uniprot ID | B1KNB6 |
| Organism | Shewanella woodyi ATCC 51908 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 380999..392261
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SWOO_RS25370 (Swoo_0310) | - | 382812..384551 (-) | 1740 | WP_012322960.1 | integrase family protein | - |
| SWOO_RS01605 (Swoo_0311) | - | 384553..385779 (-) | 1227 | WP_012322961.1 | site-specific integrase | - |
| SWOO_RS01610 (Swoo_0312) | pilC | 385999..387261 (-) | 1263 | WP_012322962.1 | type II secretion system F family protein | Machinery gene |
| SWOO_RS01615 (Swoo_0313) | pilB | 387315..389024 (-) | 1710 | WP_012322963.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| SWOO_RS01620 (Swoo_0314) | - | 389109..389552 (-) | 444 | WP_012322964.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| SWOO_RS01625 (Swoo_0315) | nadC | 390393..391283 (-) | 891 | WP_012322965.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| SWOO_RS01635 (Swoo_0316) | ampD | 391549..392121 (+) | 573 | WP_012322966.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
Sequence
Protein
Download Length: 420 a.a. Molecular weight: 45603.92 Da Isoelectric Point: 10.1184
>NTDB_id=30304 SWOO_RS01610 WP_012322962.1 385999..387261(-) (pilC) [Shewanella woodyi ATCC 51908]
MATATASKKTNKKTAKAQPKVFTYEWKGLNRDGKKTSGELRGATIAEVKSQLKSQGVNPKSVKKKAASLFKLGDPKVTAM
DIAMVTRQIATMLQAGVPLVTTIEMLGRGHEKVKMRELLGTILTEIQSGIPLSDALRPHRQYFDDLYVDLVAAGEHSGSL
DAVFERIALYKEKAEALKSKIKKAMFYPAAVVIVAIGVTTLLLLFVVPQFQEIFAGFGAELPAFTQLVIHISEALQASWY
IFAVAIIITVFLFRRAHLHSQTFRDKVDALILKIPAVGPILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYR
NALLKVRSEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGTL
VGGLIVAMYLPIFQMGKIVS
MATATASKKTNKKTAKAQPKVFTYEWKGLNRDGKKTSGELRGATIAEVKSQLKSQGVNPKSVKKKAASLFKLGDPKVTAM
DIAMVTRQIATMLQAGVPLVTTIEMLGRGHEKVKMRELLGTILTEIQSGIPLSDALRPHRQYFDDLYVDLVAAGEHSGSL
DAVFERIALYKEKAEALKSKIKKAMFYPAAVVIVAIGVTTLLLLFVVPQFQEIFAGFGAELPAFTQLVIHISEALQASWY
IFAVAIIITVFLFRRAHLHSQTFRDKVDALILKIPAVGPILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYR
NALLKVRSEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGTL
VGGLIVAMYLPIFQMGKIVS
Nucleotide
Download Length: 1263 bp
>NTDB_id=30304 SWOO_RS01610 WP_012322962.1 385999..387261(-) (pilC) [Shewanella woodyi ATCC 51908]
ATGGCCACGGCAACAGCAAGCAAAAAAACCAATAAAAAAACAGCTAAAGCCCAACCTAAGGTTTTCACCTATGAGTGGAA
AGGCTTAAACCGTGATGGAAAAAAAACCTCAGGAGAGCTTCGAGGAGCAACGATCGCAGAGGTTAAGAGTCAGCTAAAGT
CACAAGGAGTCAACCCTAAGTCAGTAAAGAAGAAAGCTGCATCTCTGTTTAAACTCGGCGACCCTAAAGTTACAGCCATG
GACATCGCCATGGTGACACGCCAAATAGCCACCATGCTTCAAGCTGGTGTACCTCTGGTAACAACCATAGAGATGCTGGG
CCGAGGTCATGAAAAAGTAAAGATGCGAGAGCTGTTAGGTACTATCTTAACTGAAATACAGTCAGGTATCCCGCTCTCAG
ATGCGCTTCGTCCCCACAGACAATATTTCGATGACCTCTATGTCGATCTTGTCGCAGCTGGTGAGCACTCAGGCTCTCTC
GATGCAGTATTTGAGCGCATAGCCCTCTATAAAGAGAAAGCCGAGGCTCTGAAATCTAAAATTAAAAAAGCCATGTTCTA
CCCAGCAGCGGTAGTCATCGTTGCGATCGGGGTCACGACTCTTTTACTCCTGTTTGTAGTGCCACAGTTTCAGGAGATCT
TTGCAGGCTTCGGTGCAGAGCTCCCCGCATTCACGCAACTCGTCATTCATATATCTGAAGCACTGCAAGCATCATGGTAT
ATCTTTGCTGTTGCTATTATCATCACTGTTTTTCTCTTTCGCCGCGCTCACCTGCACTCGCAGACTTTCAGAGACAAGGT
AGATGCACTTATTTTAAAAATACCAGCCGTAGGTCCTATCTTACACAAAGCTGCTATGGCGCGATTTGCAAGAACCTTAG
CAACAACCTTTGCTGCAGGTGTCCCTCTTATCGATGGGCTTGAATCAGCAGCAGGAGCGTCAGGTAATGCAGTGTATCGT
AATGCGCTGCTCAAAGTGCGCTCTGAAGTGATGTCGGGAATGCAGATGAATGTAGCGATGCGGACCACGGGACTTTTCCC
AGACATGCTAATTCAGATGGTAATGATAGGTGAAGAGTCAGGCTCATTGGATAATATGCTGAATAAAGTGGCTAATATCT
ATGAGATGCAGGTAGATGATGCTGTAGATGGGTTATCTAGCCTAATCGAGCCTATTATGATGGTGGTTATTGGCACTCTA
GTTGGTGGCTTAATCGTCGCCATGTATCTTCCTATCTTCCAGATGGGTAAGATTGTCAGCTGA
ATGGCCACGGCAACAGCAAGCAAAAAAACCAATAAAAAAACAGCTAAAGCCCAACCTAAGGTTTTCACCTATGAGTGGAA
AGGCTTAAACCGTGATGGAAAAAAAACCTCAGGAGAGCTTCGAGGAGCAACGATCGCAGAGGTTAAGAGTCAGCTAAAGT
CACAAGGAGTCAACCCTAAGTCAGTAAAGAAGAAAGCTGCATCTCTGTTTAAACTCGGCGACCCTAAAGTTACAGCCATG
GACATCGCCATGGTGACACGCCAAATAGCCACCATGCTTCAAGCTGGTGTACCTCTGGTAACAACCATAGAGATGCTGGG
CCGAGGTCATGAAAAAGTAAAGATGCGAGAGCTGTTAGGTACTATCTTAACTGAAATACAGTCAGGTATCCCGCTCTCAG
ATGCGCTTCGTCCCCACAGACAATATTTCGATGACCTCTATGTCGATCTTGTCGCAGCTGGTGAGCACTCAGGCTCTCTC
GATGCAGTATTTGAGCGCATAGCCCTCTATAAAGAGAAAGCCGAGGCTCTGAAATCTAAAATTAAAAAAGCCATGTTCTA
CCCAGCAGCGGTAGTCATCGTTGCGATCGGGGTCACGACTCTTTTACTCCTGTTTGTAGTGCCACAGTTTCAGGAGATCT
TTGCAGGCTTCGGTGCAGAGCTCCCCGCATTCACGCAACTCGTCATTCATATATCTGAAGCACTGCAAGCATCATGGTAT
ATCTTTGCTGTTGCTATTATCATCACTGTTTTTCTCTTTCGCCGCGCTCACCTGCACTCGCAGACTTTCAGAGACAAGGT
AGATGCACTTATTTTAAAAATACCAGCCGTAGGTCCTATCTTACACAAAGCTGCTATGGCGCGATTTGCAAGAACCTTAG
CAACAACCTTTGCTGCAGGTGTCCCTCTTATCGATGGGCTTGAATCAGCAGCAGGAGCGTCAGGTAATGCAGTGTATCGT
AATGCGCTGCTCAAAGTGCGCTCTGAAGTGATGTCGGGAATGCAGATGAATGTAGCGATGCGGACCACGGGACTTTTCCC
AGACATGCTAATTCAGATGGTAATGATAGGTGAAGAGTCAGGCTCATTGGATAATATGCTGAATAAAGTGGCTAATATCT
ATGAGATGCAGGTAGATGATGCTGTAGATGGGTTATCTAGCCTAATCGAGCCTATTATGATGGTGGTTATTGGCACTCTA
GTTGGTGGCTTAATCGTCGCCATGTATCTTCCTATCTTCCAGATGGGTAAGATTGTCAGCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
56.818 |
94.286 |
0.536 |
| pilC | Acinetobacter baylyi ADP1 |
51.25 |
95.238 |
0.488 |
| pilC | Acinetobacter baumannii D1279779 |
50.245 |
97.143 |
0.488 |
| pilC | Legionella pneumophila strain ERS1305867 |
49.257 |
96.19 |
0.474 |
| pilC | Vibrio cholerae strain A1552 |
47.328 |
93.571 |
0.443 |
| pilC | Vibrio campbellii strain DS40M4 |
44.888 |
95.476 |
0.429 |
| pilG | Neisseria meningitidis 44/76-A |
41.191 |
95.952 |
0.395 |
| pilG | Neisseria gonorrhoeae MS11 |
41.191 |
95.952 |
0.395 |