Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ETT50_RS00680 Genome accession   NZ_CP035449
Coordinates   103870..104298 (+) Length   142 a.a.
NCBI ID   WP_002986548.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm56     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 98870..109298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT50_RS00660 (ETT50_00660) - 101201..101566 (+) 366 WP_002986560.1 DUF1033 family protein -
  ETT50_RS00665 (ETT50_00665) comGA 101659..102597 (+) 939 WP_010921798.1 competence type IV pilus ATPase ComGA Machinery gene
  ETT50_RS00670 (ETT50_00670) comGB 102533..103567 (+) 1035 WP_227874644.1 competence type IV pilus assembly protein ComGB Machinery gene
  ETT50_RS00675 (ETT50_00675) comGC 103569..103895 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  ETT50_RS00680 (ETT50_00680) comGD 103870..104298 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD Machinery gene
  ETT50_RS00685 (ETT50_00685) comGE 104255..104539 (+) 285 WP_032464772.1 competence type IV pilus minor pilin ComGE Machinery gene
  ETT50_RS00690 (ETT50_00690) comGF 104532..104966 (+) 435 WP_002992738.1 competence type IV pilus minor pilin ComGF Machinery gene
  ETT50_RS00695 (ETT50_00695) comGG 104950..105276 (+) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  ETT50_RS00700 (ETT50_00700) comGH 105374..106327 (+) 954 WP_010921802.1 class I SAM-dependent methyltransferase Machinery gene
  ETT50_RS00705 (ETT50_00705) - 106386..107582 (+) 1197 WP_030126459.1 acetate kinase -
  ETT50_RS00710 (ETT50_00710) - 107768..108076 (+) 309 WP_030126458.1 hypothetical protein -
  ETT50_RS00715 (ETT50_00715) proC 108159..108929 (-) 771 WP_032464773.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16310.04 Da        Isoelectric Point: 10.3481

>NTDB_id=302942 ETT50_RS00680 WP_002986548.1 103870..104298(+) (comGD) [Streptococcus pyogenes strain emm56]
MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDISSTKIVTE
GNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYLGSGNYQKTSQSLHSP

Nucleotide


Download         Length: 429 bp        

>NTDB_id=302942 ETT50_RS00680 WP_002986548.1 103870..104298(+) (comGD) [Streptococcus pyogenes strain emm56]
ATGAAAAAGCCCGTCTTAGCAATTAAAGCTTTTACTTTGCTTGAAACTTTACTAAGTTTGTCAGTGATGAGTTTCATTAT
ATTGGGATTGTCTGTACCAGTGACAAAAAGCTATCAAAAAGTAGAAGAGCATCTGTTTTTTAGCCATTTTGAACATTTGT
ATCGACATCAGCAAAAGTTAGCCATATTACAGCAAAAACAGCGCGTCTTGGATATTTCTTCAACAAAAATTGTTACAGAA
GGTAATAGCCTAACAGTTCCTAAATCAATAACAGTGAATCATCCTTATCGGTTAGTTATTGATCAGATGGGAGGCAACCA
TTCCTTAGCTAAAATTATTTTTGACATGACTGATCGACGCTTTAAATACCAATTTTATCTAGGGAGTGGGAATTATCAAA
AAACAAGTCAAAGCTTACATAGCCCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA159

45.736

90.845

0.415
  comGD Streptococcus mutans UA140

45.736

90.845

0.415
  comGD/cglD Streptococcus mitis NCTC 12261

40.441

95.775

0.387
  comGD Streptococcus gordonii str. Challis substr. CH1

40.458

92.254

0.373
  comGD/cglD Streptococcus mitis SK321

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae Rx1

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae D39

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae R6

39.695

92.254

0.366