Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MothHH_RS13305 Genome accession   NZ_CP031054
Coordinates   2611558..2613015 (-) Length   485 a.a.
NCBI ID   WP_200901616.1    Uniprot ID   -
Organism   Moorella thermoacetica strain 39073-HH     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2606558..2618015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MothHH_RS13280 (MothHH_02687) cysE 2607624..2608340 (-) 717 WP_053095288.1 serine O-acetyltransferase -
  MothHH_RS13285 (MothHH_02688) ispF 2608669..2609160 (-) 492 WP_011393963.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MothHH_RS13290 (MothHH_02689) ispD 2609160..2609849 (-) 690 WP_011393964.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MothHH_RS13295 (MothHH_02690) - 2609837..2610988 (-) 1152 WP_011393965.1 PIN/TRAM domain-containing protein -
  MothHH_RS13300 (MothHH_02691) - 2611060..2611536 (-) 477 WP_011393966.1 CarD family transcriptional regulator -
  MothHH_RS13305 (MothHH_02692) radA 2611558..2613015 (-) 1458 WP_200901616.1 DNA repair protein RadA Machinery gene
  MothHH_RS13310 (MothHH_02693) - 2613094..2613840 (-) 747 WP_011393968.1 phosphatase -
  MothHH_RS13315 (MothHH_02694) - 2614606..2615193 (-) 588 WP_011393969.1 HD domain-containing phosphohydrolase -
  MothHH_RS13325 (MothHH_02695) - 2615736..2617205 (-) 1470 WP_011393971.1 ATP-binding protein -

Sequence

Protein


Download         Length: 485 a.a.        Molecular weight: 51521.45 Da        Isoelectric Point: 7.8213

>NTDB_id=302941 MothHH_RS13305 WP_200901616.1 2611558..2613015(-) (radA) [Moorella thermoacetica strain 39073-HH]
MNENSGADKSKGAELLTRIKERFVCQQCGYESQGFLGRCPACGSWNSLVAEAIIPEGIKKAAGSGEVPVLLSRVNDISEK
RLVTTLGEWDRVLGGGLVPGSLVLVGGAPGIGKSTLLLQVAHLLSSRYGKILYVTGEESASQTRLRARRLGAEEGEIYLL
AETNIEGILLQIERLQPVVVMVDSIQTMLLPDIQAAPGSVSQVREGAARFLRLAKDGGPAVILVGHVTKEGFLAGPKVLE
HLVDCVLYLEGERYQAYRILRSVKNRFGSTNEIGVFEMTGSGLQEVTNPSAMLMAERPAGVAGSSVVACLEGTRPLLLEI
QALVSKTAFGNPRRLATGIDFNRALLLAAVLEKRAGLPLGGYDIYLNVAGGIAINEPAADLGICLAIASGLKDRPLESRT
LVLGEVGLAGEVRAVTQLERRVEEAARLGFNRFIIPAGNRGGLKGQSGCEIYKVSTINEALRLALVNTGSGAGDNTLSNP
FYKYS

Nucleotide


Download         Length: 1458 bp        

>NTDB_id=302941 MothHH_RS13305 WP_200901616.1 2611558..2613015(-) (radA) [Moorella thermoacetica strain 39073-HH]
GTGAATGAAAATAGCGGGGCTGATAAAAGCAAGGGGGCAGAACTCCTGACCAGGATCAAAGAACGCTTCGTTTGCCAGCA
GTGCGGTTATGAATCCCAGGGCTTCCTGGGCCGATGCCCGGCGTGTGGTAGTTGGAATAGCCTGGTGGCCGAGGCCATAA
TTCCAGAGGGTATAAAAAAAGCGGCAGGCTCCGGGGAAGTCCCCGTCCTGCTATCCCGGGTAAATGATATCAGTGAAAAG
AGGCTGGTGACTACCCTGGGCGAATGGGACCGGGTCCTGGGAGGCGGGCTAGTTCCCGGTTCCCTGGTCCTGGTTGGCGG
GGCTCCCGGGATTGGTAAGTCTACCCTCCTTCTCCAGGTGGCCCACTTACTCTCTTCGAGGTACGGTAAAATACTCTATG
TCACCGGAGAAGAATCCGCCAGCCAGACCCGGTTAAGGGCTCGACGCCTGGGCGCCGAGGAAGGCGAGATCTACTTACTG
GCGGAAACTAATATTGAAGGGATCCTCCTGCAGATAGAACGGCTGCAGCCGGTAGTAGTTATGGTGGATTCTATCCAGAC
GATGCTTCTTCCTGATATCCAGGCTGCCCCGGGCAGCGTTTCCCAGGTGCGGGAAGGAGCGGCCCGCTTTTTACGCCTGG
CCAAGGATGGCGGCCCGGCAGTAATTCTGGTGGGTCACGTCACCAAGGAAGGATTCCTGGCCGGCCCGAAGGTCCTGGAA
CACCTGGTGGATTGTGTCCTCTACCTGGAGGGTGAACGCTACCAGGCCTACCGCATTCTGCGGTCCGTTAAAAATCGCTT
CGGCTCCACCAATGAGATTGGCGTTTTTGAGATGACCGGCTCCGGTTTGCAGGAAGTAACCAACCCCTCGGCCATGCTTA
TGGCCGAGCGCCCGGCCGGAGTGGCGGGCTCCAGTGTCGTCGCCTGCCTGGAAGGCACCCGGCCCCTTCTACTGGAGATC
CAGGCCCTGGTGAGTAAGACTGCCTTTGGAAACCCGCGGCGGCTAGCTACCGGTATTGATTTCAACCGGGCCCTCCTGCT
GGCAGCGGTCCTGGAGAAACGGGCCGGCCTGCCCCTGGGGGGCTACGATATATACCTTAACGTGGCCGGTGGTATTGCCA
TCAATGAACCGGCAGCCGACCTGGGTATATGCCTGGCCATTGCCTCTGGTTTGAAGGATCGTCCCCTGGAATCCCGGACC
CTTGTCCTGGGGGAGGTTGGCCTTGCTGGAGAGGTAAGGGCCGTCACCCAGCTGGAAAGGCGCGTTGAGGAAGCAGCCAG
GCTGGGTTTTAACCGCTTTATAATTCCGGCTGGCAATAGGGGGGGTCTTAAAGGGCAGAGCGGCTGCGAAATATATAAAG
TATCTACAATAAATGAGGCCCTGCGACTGGCCCTCGTTAATACCGGCTCAGGGGCAGGCGATAATACGTTGAGTAACCCG
TTTTATAAATACTCTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(92-231)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(23-49)

Subunit ChlI of Mg-chelatase (ChlI)

(364-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

54.486

94.227

0.513
  radA Streptococcus mitis NCTC 12261

52.993

92.99

0.493
  radA Streptococcus mitis SK321

52.993

92.99

0.493
  radA Streptococcus pneumoniae Rx1

52.993

92.99

0.493
  radA Streptococcus pneumoniae D39

52.993

92.99

0.493
  radA Streptococcus pneumoniae R6

52.993

92.99

0.493
  radA Streptococcus pneumoniae TIGR4

52.993

92.99

0.493

Multiple sequence alignment