Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DUN60_RS00195 Genome accession   NZ_CP031055
Coordinates   48028..48582 (+) Length   184 a.a.
NCBI ID   WP_114632926.1    Uniprot ID   -
Organism   Vibrio splendidus strain Vibrio sp     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 43028..53582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUN60_RS00185 galU 46072..46944 (-) 873 WP_065606690.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  DUN60_RS00190 qstR 47102..47749 (-) 648 WP_017084684.1 LuxR C-terminal-related transcriptional regulator Regulator
  DUN60_RS00195 ssb 48028..48582 (+) 555 WP_114632926.1 single-stranded DNA-binding protein Machinery gene
  DUN60_RS00200 csrD 48744..50759 (+) 2016 WP_054547883.1 RNase E specificity factor CsrD -
  DUN60_RS00205 - 50762..52204 (+) 1443 WP_054547882.1 hypothetical protein -
  DUN60_RS00210 pilO 52204..52851 (+) 648 WP_065207160.1 type 4a pilus biogenesis protein PilO -
  DUN60_RS00215 - 52844..53176 (+) 333 WP_004735948.1 hypothetical protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20245.36 Da        Isoelectric Point: 5.2358

>NTDB_id=302944 DUN60_RS00195 WP_114632926.1 48028..48582(+) (ssb) [Vibrio splendidus strain Vibrio sp]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGSWGQPQQPQAQQQYSAPAQQQPKAP
QQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=302944 DUN60_RS00195 WP_114632926.1 48028..48582(+) (ssb) [Vibrio splendidus strain Vibrio sp]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCCAATGG
CGGTGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACGCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACAGAAGTCGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGTGGTCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACAACCAACAGC
AAGGTAGTTGGGGTCAGCCACAACAGCCACAAGCACAGCAACAATACAGTGCTCCAGCTCAACAGCAGCCGAAAGCACCT
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

82.703

100

0.832
  ssb Glaesserella parasuis strain SC1401

57.447

100

0.587
  ssb Neisseria meningitidis MC58

46.995

99.457

0.467
  ssb Neisseria gonorrhoeae MS11

46.995

99.457

0.467

Multiple sequence alignment