Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   DUN60_RS00190 Genome accession   NZ_CP031055
Coordinates   47102..47749 (-) Length   215 a.a.
NCBI ID   WP_017084684.1    Uniprot ID   -
Organism   Vibrio splendidus strain Vibrio sp     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 42102..52749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUN60_RS00180 uvrA 43017..45848 (-) 2832 WP_114632925.1 excinuclease ABC subunit UvrA -
  DUN60_RS00185 galU 46072..46944 (-) 873 WP_065606690.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  DUN60_RS00190 qstR 47102..47749 (-) 648 WP_017084684.1 LuxR C-terminal-related transcriptional regulator Regulator
  DUN60_RS00195 ssb 48028..48582 (+) 555 WP_114632926.1 single-stranded DNA-binding protein Machinery gene
  DUN60_RS00200 csrD 48744..50759 (+) 2016 WP_054547883.1 RNase E specificity factor CsrD -
  DUN60_RS00205 - 50762..52204 (+) 1443 WP_054547882.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25013.17 Da        Isoelectric Point: 9.7938

>NTDB_id=302943 DUN60_RS00190 WP_017084684.1 47102..47749(-) (qstR) [Vibrio splendidus strain Vibrio sp]
MRKSRYARTLHFLCIDPNDTYLHVKEIEKHLSIILYKMTPDDLMLFDRKQSNRILLVDYKEVPRLINLHPNLPVMWKNHE
IILFNVPKALPTSELITFGVLKGLFYNSEEKAKIAKGLEEVINGDNWLPRKVASQLLFYYRNIVSTNTTPTNVDLTIREL
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=302943 DUN60_RS00190 WP_017084684.1 47102..47749(-) (qstR) [Vibrio splendidus strain Vibrio sp]
ATGAGAAAATCTCGATACGCTCGCACTTTGCATTTTCTGTGCATCGACCCAAACGACACCTATCTACATGTAAAAGAGAT
AGAAAAGCACTTATCTATTATTCTCTACAAAATGACACCGGACGATTTGATGTTATTTGATCGAAAGCAGAGCAACCGAA
TTTTACTGGTTGATTACAAAGAGGTGCCTCGATTAATCAACCTTCATCCAAATCTACCTGTGATGTGGAAAAATCATGAG
ATCATTTTATTCAATGTCCCCAAAGCTCTTCCCACATCGGAGTTGATTACGTTTGGCGTATTAAAAGGTCTCTTTTACAA
CTCTGAAGAGAAAGCCAAAATAGCGAAGGGACTTGAAGAGGTCATTAATGGAGACAACTGGCTACCTAGAAAAGTGGCAA
GCCAATTACTCTTCTACTATCGAAATATCGTGAGCACCAATACCACCCCTACTAATGTCGACTTAACCATTAGAGAGCTA
CAAGTGATTCGCTGCCTTCAATCAGGCTCATCAAACACGCAAATAGCCGATGACTTGTTTATTAGCGAATTCACCGTCAA
ATCTCATCTTTATCAAATATTTCGTAAGTTAGCCGTTAAGAATAGAGTCCAAGCTATTGCATGGGCAAACCAGAACTTGC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

56.279

100

0.563
  qstR Vibrio parahaemolyticus RIMD 2210633

53.953

100

0.54
  qstR Vibrio cholerae strain A1552

49.533

99.535

0.493

Multiple sequence alignment