Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | AVIN_RS24485 | Genome accession | NC_012560 |
| Coordinates | 1164228..1164725 (+) | Length | 165 a.a. |
| NCBI ID | WP_012699856.1 | Uniprot ID | C1DPK4 |
| Organism | Azotobacter vinelandii DJ | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1159228..1169725
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVIN_RS05480 (Avin_12070) | pilD | 1159685..1160554 (-) | 870 | WP_012699852.1 | A24 family peptidase | Machinery gene |
| AVIN_RS05485 (Avin_12080) | pilC | 1160557..1161774 (-) | 1218 | WP_012699853.1 | type II secretion system F family protein | Machinery gene |
| AVIN_RS05490 (Avin_12090) | pilB | 1161999..1163699 (-) | 1701 | WP_012699854.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AVIN_RS24485 (Avin_12104) | pilE | 1164228..1164725 (+) | 498 | WP_012699856.1 | pilin | Machinery gene |
| AVIN_RS05500 (Avin_12110) | nadC | 1165383..1166231 (-) | 849 | WP_012699858.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AVIN_RS05505 (Avin_12120) | ampD | 1166373..1166936 (+) | 564 | WP_012699859.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| AVIN_RS05510 (Avin_12130) | ampE | 1166933..1167775 (+) | 843 | WP_012699860.1 | regulatory signaling modulator protein AmpE | - |
| AVIN_RS05515 (Avin_12140) | - | 1167936..1168715 (-) | 780 | WP_012699861.1 | TatD family hydrolase | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 16792.99 Da Isoelectric Point: 4.5044
>NTDB_id=30290 AVIN_RS24485 WP_012699856.1 1164228..1164725(+) (pilE) [Azotobacter vinelandii DJ]
MKAQAQNGFTLIELMMVVAIIGILAAVALPAYQDYTARAKVSEVVLAASSCRIAITEASQIGFAADATADGFGCGETASG
ADAPSQYVASVNTSAVGVITVVAQNISQLGTNTALEFVPYTDAGLSAAASAADFNRTTLNSVKGWKCQSAASNGIESKYL
PASCR
MKAQAQNGFTLIELMMVVAIIGILAAVALPAYQDYTARAKVSEVVLAASSCRIAITEASQIGFAADATADGFGCGETASG
ADAPSQYVASVNTSAVGVITVVAQNISQLGTNTALEFVPYTDAGLSAAASAADFNRTTLNSVKGWKCQSAASNGIESKYL
PASCR
Nucleotide
Download Length: 498 bp
>NTDB_id=30290 AVIN_RS24485 WP_012699856.1 1164228..1164725(+) (pilE) [Azotobacter vinelandii DJ]
ATGAAAGCTCAAGCGCAGAATGGTTTTACCCTGATCGAATTGATGATGGTGGTGGCGATCATCGGGATTTTGGCTGCGGT
AGCGTTGCCGGCTTATCAGGATTACACTGCGCGTGCCAAGGTTTCCGAAGTTGTATTGGCAGCCTCCAGTTGCCGCATCG
CGATTACCGAAGCCTCGCAGATTGGTTTCGCTGCTGATGCAACCGCCGATGGGTTCGGTTGTGGTGAGACTGCTAGTGGT
GCCGATGCTCCATCCCAGTATGTGGCATCGGTTAACACCTCTGCAGTCGGGGTTATTACTGTCGTTGCCCAAAATATTTC
CCAACTTGGCACTAATACCGCTCTGGAGTTTGTTCCTTATACCGACGCAGGCTTGTCCGCCGCTGCTAGTGCTGCGGATT
TCAATCGCACAACTCTGAACTCTGTAAAAGGATGGAAGTGTCAATCGGCCGCATCGAATGGCATAGAGTCTAAGTATCTG
CCCGCTAGCTGTCGTTAA
ATGAAAGCTCAAGCGCAGAATGGTTTTACCCTGATCGAATTGATGATGGTGGTGGCGATCATCGGGATTTTGGCTGCGGT
AGCGTTGCCGGCTTATCAGGATTACACTGCGCGTGCCAAGGTTTCCGAAGTTGTATTGGCAGCCTCCAGTTGCCGCATCG
CGATTACCGAAGCCTCGCAGATTGGTTTCGCTGCTGATGCAACCGCCGATGGGTTCGGTTGTGGTGAGACTGCTAGTGGT
GCCGATGCTCCATCCCAGTATGTGGCATCGGTTAACACCTCTGCAGTCGGGGTTATTACTGTCGTTGCCCAAAATATTTC
CCAACTTGGCACTAATACCGCTCTGGAGTTTGTTCCTTATACCGACGCAGGCTTGTCCGCCGCTGCTAGTGCTGCGGATT
TCAATCGCACAACTCTGAACTCTGTAAAAGGATGGAAGTGTCAATCGGCCGCATCGAATGGCATAGAGTCTAAGTATCTG
CCCGCTAGCTGTCGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Neisseria gonorrhoeae strain FA1090 |
40 |
100 |
0.424 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
37.143 |
100 |
0.394 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
39.024 |
99.394 |
0.388 |
| pilA2 | Legionella pneumophila str. Paris |
38.889 |
98.182 |
0.382 |
| pilE | Neisseria gonorrhoeae MS11 |
37.278 |
100 |
0.382 |
| pilA/pilA1 | Eikenella corrodens VA1 |
36.047 |
100 |
0.376 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
36.527 |
100 |
0.37 |