Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   DS740_RS12150 Genome accession   NZ_CP030937
Coordinates   2340463..2341083 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus sp. DM2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2335463..2346083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS740_RS12110 (DS740_12110) - 2336594..2337100 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  DS740_RS12115 (DS740_12115) - 2337238..2337657 (+) 420 WP_041849958.1 Hsp20/alpha crystallin family protein -
  DS740_RS12120 (DS740_12120) - 2337678..2338055 (-) 378 WP_004398696.1 YppG family protein -
  DS740_RS12125 (DS740_12125) - 2338243..2338431 (+) 189 WP_003230690.1 YppF family protein -
  DS740_RS12130 (DS740_12130) - 2338470..2338841 (-) 372 WP_021481525.1 YppE family protein -
  DS740_RS12135 (DS740_12135) - 2338887..2339132 (-) 246 WP_041849959.1 DUF5446 family protein -
  DS740_RS12140 (DS740_12140) sspM 2339331..2339435 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  DS740_RS12145 (DS740_12145) - 2339460..2340422 (-) 963 WP_041849960.1 DUF2515 domain-containing protein -
  DS740_RS12150 (DS740_12150) recU 2340463..2341083 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  DS740_RS12155 (DS740_12155) - 2341105..2343855 (+) 2751 WP_041849961.1 PBP1A family penicillin-binding protein -
  DS740_RS12160 (DS740_12160) - 2343930..2344424 (-) 495 WP_041849962.1 YpoC family protein -
  DS740_RS12165 (DS740_12165) nth 2344421..2345080 (-) 660 WP_009967580.1 endonuclease III -
  DS740_RS12170 (DS740_12170) dnaD 2345099..2345797 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=302602 DS740_RS12150 WP_004399067.1 2340463..2341083(+) (recU) [Bacillus sp. DM2]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=302602 DS740_RS12150 WP_004399067.1 2340463..2341083(+) (recU) [Bacillus sp. DM2]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment