Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   DS737_RS14810 Genome accession   NZ_CP030880
Coordinates   3199050..3200615 (+) Length   521 a.a.
NCBI ID   WP_113997841.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain HW-2A     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3194050..3205615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS737_RS14790 - 3194562..3195863 (+) 1302 WP_026056262.1 homoserine dehydrogenase -
  DS737_RS14795 thrC 3195922..3197061 (+) 1140 WP_004637599.1 threonine synthase -
  DS737_RS14800 pbpG 3197121..3198185 (-) 1065 WP_004637598.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  DS737_RS14805 - 3198396..3199031 (+) 636 WP_005083960.1 response regulator -
  DS737_RS14810 pilS 3199050..3200615 (+) 1566 WP_113997841.1 PAS domain-containing sensor histidine kinase Regulator
  DS737_RS14815 pilR 3200638..3202068 (+) 1431 WP_113997842.1 sigma-54 dependent transcriptional regulator Regulator
  DS737_RS14820 - 3202109..3203275 (-) 1167 WP_113997843.1 S41 family peptidase -
  DS737_RS14825 gpmI 3203285..3204829 (-) 1545 WP_008942248.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59487.55 Da        Isoelectric Point: 6.5501

>NTDB_id=302035 DS737_RS14810 WP_113997841.1 3199050..3200615(+) (pilS) [Acinetobacter haemolyticus strain HW-2A]
MLGKVASSVSQTIYQLGMWYSGYRLIISVCLLLIFLLTAEQLTTNYLYPTLYSYTLIVYIALNVSQLLFLKLFPTHVNKQ
LIAIFLVDVICLSTITFATGGPNLQLSLLYVIIIFASAILLNAQLSLVVTLLAVIMIVYQRFLGNLFDYNNLNHLSNSLL
LVFLFLVVYAIGRIAVQRFKILEALTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLTNPAANTLLGIHLPVSHE
KTPLIKWQPDLFELIKFSDLEDGEEFTFESQQSLYTVHVRVKHLVVPEQALVLLILKDAQKLTQRVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELFNESDAHQQQMLSRMIRKQAKRIDRIVEDTLAMARNKPTEPQNIHLMEFFESLFEEDLVDVK
HMIQLELSENIQILFDDKQLRQVLINLVRNALRHNASDIPYIEIKVHAEETKVRIDVIDFGLGVAKRDLSQLFKPFFSTE
IKGTGLGLYLSHSFCEANHAKLTYVERQQGACFRIECSIIN

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=302035 DS737_RS14810 WP_113997841.1 3199050..3200615(+) (pilS) [Acinetobacter haemolyticus strain HW-2A]
ATGTTGGGAAAAGTTGCATCTTCGGTGTCACAAACCATTTACCAGCTTGGGATGTGGTATAGCGGATATCGCCTCATTAT
TTCCGTATGCCTATTGCTCATTTTCTTGTTAACTGCTGAGCAACTGACCACCAATTATCTTTACCCAACATTGTATTCAT
ATACGCTGATTGTCTATATTGCATTAAATGTCAGTCAGCTTTTATTTCTTAAATTATTTCCGACCCACGTGAATAAACAG
CTGATTGCGATCTTTCTTGTCGATGTCATCTGTTTAAGTACCATTACCTTTGCAACAGGCGGGCCAAACTTACAGCTCAG
TTTGCTTTATGTCATTATTATTTTTGCCTCGGCAATTTTATTGAATGCTCAGCTTTCTCTAGTGGTAACGCTGCTCGCTG
TTATCATGATTGTGTATCAGCGTTTTCTGGGAAATTTATTTGACTACAACAATTTAAACCATCTCAGTAATAGCCTGCTG
TTGGTATTTTTATTCTTGGTGGTATATGCCATAGGGCGTATTGCAGTACAGCGTTTTAAAATTTTAGAAGCGCTTACTTT
TCATCAATCCATTGAAATTCATCAACTCCAAAACATTAACCGTTATATCTTGGAGCAAATTGAGGATGGATATCTGGTTT
TAGATGAAAGTAATCATATTGTTTTAACCAATCCTGCTGCCAATACATTATTAGGTATTCATTTACCTGTTTCCCATGAA
AAAACGCCCTTAATCAAATGGCAACCCGATCTATTTGAACTGATCAAATTCAGCGACCTAGAAGATGGTGAAGAGTTCAC
TTTTGAGTCACAACAAAGTTTGTATACCGTCCATGTACGTGTCAAACATTTGGTCGTACCTGAACAAGCATTAGTTTTAT
TAATTCTCAAAGATGCTCAGAAATTAACTCAGCGTGTACAACAACTCAAACTAGCGGCACTTGGTCAACTTTCTGCCAGT
ATTGCACATGAAATTCGCAATCCTTTAGCCGCGATTGTGCAAGCCAATGAGCTTTTTAATGAAAGCGATGCGCATCAACA
ACAAATGCTCTCTCGTATGATTCGTAAACAAGCAAAACGTATCGATCGGATTGTAGAAGATACTTTGGCAATGGCACGCA
ATAAACCGACCGAACCACAAAATATTCATCTTATGGAGTTCTTTGAAAGTTTATTTGAAGAGGATCTAGTCGATGTCAAA
CACATGATCCAATTAGAGCTTTCAGAAAATATTCAAATCTTATTTGATGACAAACAGTTGCGCCAAGTGCTGATTAATTT
GGTGAGAAATGCATTAAGACACAACGCATCGGATATACCTTATATCGAAATTAAAGTACACGCTGAAGAGACTAAAGTTC
GAATTGATGTTATCGATTTTGGTTTAGGGGTAGCAAAAAGAGACCTTTCTCAACTGTTTAAACCATTTTTTAGTACCGAA
ATCAAAGGAACTGGTTTAGGATTGTATTTGTCTCATAGTTTCTGTGAGGCGAATCATGCAAAGCTCACTTATGTAGAGCG
ACAACAAGGAGCATGCTTCAGGATTGAATGCTCAATAATTAATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

65.631

98.848

0.649

Multiple sequence alignment