Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   DQ228_RS04085 Genome accession   NZ_CP030250
Coordinates   782281..782442 (-) Length   53 a.a.
NCBI ID   WP_014727422.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS20     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 773042..789710 782281..782442 within 0


Gene organization within MGE regions


Location: 773042..789710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQ228_RS04060 dltD 773042..774310 (+) 1269 WP_232979800.1 D-alanyl-lipoteichoic acid biosynthesis protein DltD -
  DQ228_RS04065 - 774427..775676 (-) 1250 Protein_776 ISL3 family transposase -
  DQ228_RS04070 - 775788..777131 (-) 1344 Protein_777 IS3 family transposase -
  DQ228_RS04075 - 777330..779966 (-) 2637 WP_014621434.1 calcium-translocating P-type ATPase, PMCA-type -
  DQ228_RS04080 pabB 780143..781861 (-) 1719 WP_014608193.1 aminodeoxychorismate synthase component I -
  DQ228_RS04085 prx 782281..782442 (-) 162 WP_014727422.1 hypothetical protein Regulator
  DQ228_RS04090 - 782926..783201 (-) 276 WP_014727423.1 hypothetical protein -
  DQ228_RS04095 - 783218..783400 (-) 183 WP_014727424.1 hypothetical protein -
  DQ228_RS04100 - 783729..784802 (-) 1074 WP_014727425.1 VapE domain-containing protein -
  DQ228_RS04105 - 785138..785995 (-) 858 WP_014727426.1 primase alpha helix C-terminal domain-containing protein -
  DQ228_RS04110 - 786010..786282 (-) 273 WP_011227098.1 MerR family transcriptional regulator -
  DQ228_RS04115 - 786284..786625 (-) 342 WP_224102964.1 hypothetical protein -
  DQ228_RS04120 - 786612..786848 (-) 237 WP_014727428.1 hypothetical protein -
  DQ228_RS04125 - 786862..787056 (-) 195 WP_014727429.1 hypothetical protein -
  DQ228_RS04130 - 787060..787353 (-) 294 WP_232979812.1 hypothetical protein -
  DQ228_RS04135 - 787592..787789 (-) 198 WP_014608200.1 helix-turn-helix domain-containing protein -
  DQ228_RS04140 - 787970..788464 (+) 495 WP_370869443.1 helix-turn-helix transcriptional regulator -
  DQ228_RS04145 - 788544..789710 (+) 1167 WP_014727432.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 53 a.a.        Molecular weight: 6084.95 Da        Isoelectric Point: 4.2412

>NTDB_id=300424 DQ228_RS04085 WP_014727422.1 782281..782442(-) (prx) [Streptococcus thermophilus strain CS20]
MLTYDEFKEAMDKGFIKGDTVQIVRLDGEQVEPREILSLEKVSDIIKELGKDN

Nucleotide


Download         Length: 162 bp        

>NTDB_id=300424 DQ228_RS04085 WP_014727422.1 782281..782442(-) (prx) [Streptococcus thermophilus strain CS20]
ATGCTGACTTATGATGAATTTAAAGAGGCAATGGACAAGGGTTTTATTAAAGGTGATACTGTCCAGATTGTCCGATTAGA
CGGTGAACAAGTTGAGCCACGCGAAATATTGAGCTTAGAAAAGGTATCGGATATAATAAAGGAACTAGGCAAGGACAACT
AA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS8232

48.333

100

0.547
  prx Streptococcus pyogenes MGAS315

46.667

100

0.528
  prx Streptococcus pyogenes MGAS315

46.667

100

0.528
  prx Streptococcus pyogenes MGAS315

45

100

0.509
  prx Streptococcus pyogenes MGAS315

56.818

83.019

0.472
  prx Streptococcus pyogenes MGAS315

57.143

79.245

0.453
  prx Streptococcus pyogenes MGAS315

60.526

71.698

0.434

Multiple sequence alignment