Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SHAL_RS02390 Genome accession   NC_010334
Coordinates   555448..556710 (-) Length   420 a.a.
NCBI ID   WP_012275598.1    Uniprot ID   B0TQQ1
Organism   Shewanella halifaxensis HAW-EB4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 550448..561710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHAL_RS02365 (Shal_0464) mutT 552397..552786 (-) 390 WP_012275593.1 8-oxo-dGTP diphosphatase MutT -
  SHAL_RS02370 (Shal_0465) yacG 552783..553022 (-) 240 WP_012275594.1 DNA gyrase inhibitor YacG -
  SHAL_RS02375 (Shal_0466) zapD 553082..553816 (-) 735 WP_012275595.1 cell division protein ZapD -
  SHAL_RS02380 (Shal_0467) coaE 553825..554430 (-) 606 WP_012275596.1 dephospho-CoA kinase -
  SHAL_RS02385 (Shal_0468) - 554459..555370 (-) 912 WP_012275597.1 A24 family peptidase -
  SHAL_RS02390 (Shal_0469) pilC 555448..556710 (-) 1263 WP_012275598.1 type II secretion system F family protein Machinery gene
  SHAL_RS02395 (Shal_0470) pilB 556756..558462 (-) 1707 WP_012275599.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SHAL_RS02400 (Shal_0471) - 558537..558989 (-) 453 WP_012275600.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  SHAL_RS02405 (Shal_0472) nadC 559772..560656 (-) 885 WP_012275601.1 carboxylating nicotinate-nucleotide diphosphorylase -
  SHAL_RS02410 (Shal_0473) ampD 560903..561445 (+) 543 WP_012275602.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46007.32 Da        Isoelectric Point: 10.3155

>NTDB_id=29940 SHAL_RS02390 WP_012275598.1 555448..556710(-) (pilC) [Shewanella halifaxensis HAW-EB4]
MATATMKTKKPSAKKTKNQPKVLTFQWKGTNRDGAKTSGELRGVSSAEIRAQLKAQGVVPKNVRKKSAPLFKSEKKIKPM
DIAMMTRQIATMLAAGVPIVTTLELLGKGHEKAKMRELLATIVNDVQSGIPLSDSLRPHRKYFDDLYVDLVAAGEHSGSL
DAVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAIMVTALLLLFVVPQFEDIFNGFGAELPAFTQFIISISRWLQASWY
IFVIAIIVGIWSFRRAHLNSQKFRDRVDEFVLKIPAIGDILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYR
KAILKIRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPVMMVVIGTV
VGGLIVGMYLPIFEMGNVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=29940 SHAL_RS02390 WP_012275598.1 555448..556710(-) (pilC) [Shewanella halifaxensis HAW-EB4]
ATGGCGACGGCAACAATGAAAACTAAAAAGCCCAGTGCCAAGAAAACAAAAAACCAACCCAAAGTCCTCACCTTTCAGTG
GAAAGGCACCAATCGCGATGGCGCTAAAACATCTGGCGAGCTAAGAGGCGTATCGAGCGCCGAGATCCGTGCACAACTTA
AAGCTCAAGGTGTCGTTCCAAAAAACGTTCGTAAAAAGTCGGCACCGCTGTTTAAGTCAGAGAAAAAAATCAAACCCATG
GATATCGCCATGATGACTCGCCAGATAGCCACCATGCTGGCTGCAGGCGTACCTATTGTGACGACTCTCGAGCTGCTTGG
TAAAGGCCATGAAAAAGCCAAGATGCGAGAACTACTTGCCACCATCGTCAACGATGTACAATCGGGCATACCTCTCTCTG
ACTCTTTAAGACCCCATAGAAAATATTTTGATGATCTCTATGTCGATCTGGTCGCAGCGGGTGAACACTCCGGCTCACTG
GATGCGGTATTTGACAGAATTGCGACTTACCGAGAAAAATCTGAGGCACTAAAATCAAAAATTAAGAAGGCGATGTTCTA
CCCCGCCGCCGTGGTTATCGTCGCTATTATGGTAACAGCCTTACTGCTGCTATTTGTCGTTCCCCAGTTTGAGGATATTT
TTAACGGCTTTGGCGCAGAACTCCCTGCATTTACACAATTCATCATTAGCATATCTCGCTGGCTACAGGCTTCTTGGTAC
ATCTTTGTGATCGCCATTATCGTTGGCATTTGGAGCTTTAGGCGCGCGCACCTTAATTCACAAAAATTCAGGGATAGGGT
GGATGAGTTTGTACTAAAAATACCTGCCATCGGCGATATCTTGCACAAAGGCGCCATGGCACGTTTCGCTCGCACCCTAG
CAACCACCTTTGCCGCTGGTGTGCCGTTAATCGATGGTCTAGAGTCGGCAGCAGGCGCATCGGGTAATGCGGTCTATCGT
AAAGCTATTTTAAAAATTCGCACCGAAGTGATGTCGGGCATGCAGATGAATGTCGCCATGCGCACCACGGGGTTGTTTCC
CGACATGCTGATCCAGATGGTGATGATCGGTGAAGAGTCGGGATCACTTGATAATATGCTCAATAAAGTCGCTAATATCT
ACGAAATGCAGGTCGATGATGCCGTCGATGGCTTATCAAGCCTAATCGAGCCCGTTATGATGGTGGTTATCGGTACCGTG
GTAGGCGGCCTTATTGTGGGTATGTACCTACCTATTTTCGAAATGGGTAATGTAGTAGGATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(86-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0TQQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.962

94.048

0.536
  pilC Acinetobacter baylyi ADP1

50.244

97.619

0.49
  pilC Legionella pneumophila strain ERS1305867

50.743

96.19

0.488
  pilC Acinetobacter baumannii D1279779

49.756

97.619

0.486
  pilC Vibrio cholerae strain A1552

48.175

97.857

0.471
  pilC Vibrio campbellii strain DS40M4

45.409

95.952

0.436
  pilG Neisseria meningitidis 44/76-A

43.342

91.19

0.395
  pilG Neisseria gonorrhoeae MS11

43.342

91.19

0.395

Multiple sequence alignment