Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   COXBURSA331_RS00645 Genome accession   NC_010117
Coordinates   82339..83265 (-) Length   308 a.a.
NCBI ID   WP_040939852.1    Uniprot ID   -
Organism   Coxiella burnetii RSA 331     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 77339..88265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COXBURSA331_RS00615 (COXBURSA331_A0082) - 77709..77849 (-) 141 WP_010958591.1 hypothetical protein -
  COXBURSA331_RS12215 - 78123..78242 (-) 120 Protein_82 hypothetical protein -
  COXBURSA331_RS00620 (COXBURSA331_A0083) - 78292..78852 (-) 561 WP_012220042.1 L-threonylcarbamoyladenylate synthase -
  COXBURSA331_RS00625 (COXBURSA331_A0084) purE 78855..79355 (-) 501 WP_005769750.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  COXBURSA331_RS00630 - 79386..79556 (+) 171 WP_010958590.1 hypothetical protein -
  COXBURSA331_RS00635 (COXBURSA331_A0086) topA 79563..81860 (-) 2298 WP_012220043.1 type I DNA topoisomerase -
  COXBURSA331_RS00640 (COXBURSA331_A0087) - 81863..82342 (-) 480 WP_010958588.1 DUF494 domain-containing protein -
  COXBURSA331_RS00645 (COXBURSA331_A0088) dprA 82339..83265 (-) 927 WP_040939852.1 DNA-processing protein DprA Machinery gene
  COXBURSA331_RS00650 (COXBURSA331_A0090) fmt 83453..84397 (+) 945 WP_010958586.1 methionyl-tRNA formyltransferase -
  COXBURSA331_RS00655 (COXBURSA331_A0092) gmhB 84410..84964 (+) 555 WP_005769732.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  COXBURSA331_RS00660 (COXBURSA331_A0091) - 84940..85227 (-) 288 WP_005769730.1 acylphosphatase -
  COXBURSA331_RS00665 (COXBURSA331_A0094) - 85423..86226 (+) 804 WP_017253341.1 epoxyqueuosine reductase QueH -
  COXBURSA331_RS00670 (COXBURSA331_A0096) - 86223..86708 (+) 486 WP_005769725.1 dihydrofolate reductase -
  COXBURSA331_RS00675 (COXBURSA331_A0095) - 86681..86912 (-) 232 Protein_94 Txe/YoeB family addiction module toxin -
  COXBURSA331_RS00680 (COXBURSA331_A0097) - 86888..87763 (-) 876 WP_010958582.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 33096.39 Da        Isoelectric Point: 8.2929

>NTDB_id=29614 COXBURSA331_RS00645 WP_040939852.1 82339..83265(-) (dprA) [Coxiella burnetii RSA 331]
MQPPFNALLFFAMPNSQLDPEWTTAPNHHILTLDHPSYPTLLKEIPDPPKKLYIMGDPLILNQPQFAIVGSRNPTVTGCE
IAQEMAEKLVQAGFHITSGLALGIDAASHRGALKAGGQTIAVLGSGLTNIYPRRHHRLAEQISQKGALVSEFPLTMPPLP
TNFPRRNRIIIGLSLGTLVVEATLGSGSLITAKLAAEQNREVFAIPGSIRNPLSQGCRALIKEGAKLVDSIGDIIAELSY
EATGASAPIQALDKNEHKLLECIGFEVTSIDQLIARSGFSASIVASLLLRIELQGYIKSRPGGVIRVK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=29614 COXBURSA331_RS00645 WP_040939852.1 82339..83265(-) (dprA) [Coxiella burnetii RSA 331]
TTGCAACCTCCCTTCAATGCACTATTATTTTTCGCCATGCCAAATTCTCAATTAGACCCAGAATGGACGACAGCGCCGAA
CCACCATATTTTGACGCTCGATCATCCCTCCTACCCTACTTTATTGAAGGAAATCCCCGATCCGCCCAAAAAGCTCTACA
TCATGGGTGACCCTTTGATATTAAATCAGCCGCAATTTGCCATCGTCGGCAGCCGTAATCCAACCGTCACCGGCTGCGAA
ATCGCACAAGAAATGGCAGAGAAACTCGTTCAAGCTGGTTTTCACATCACCAGCGGCCTTGCACTTGGCATCGATGCCGC
AAGTCACCGCGGGGCTTTAAAAGCAGGAGGCCAAACCATAGCCGTACTCGGCAGCGGCTTAACTAACATATATCCTCGAC
GCCACCACCGTCTGGCGGAACAAATTTCCCAAAAAGGCGCCCTCGTCTCAGAATTCCCGCTAACCATGCCGCCACTCCCC
ACCAACTTCCCTCGCCGCAACCGCATCATCATCGGATTAAGCCTCGGTACGCTCGTGGTGGAAGCTACCCTTGGCTCAGG
CTCTCTGATCACCGCGAAATTAGCCGCCGAACAAAACCGGGAAGTTTTCGCCATCCCGGGTTCAATCCGAAACCCTCTTT
CTCAGGGATGCCGTGCTCTCATCAAAGAGGGCGCTAAACTGGTTGATTCTATAGGGGATATTATTGCAGAATTGAGTTAT
GAGGCTACGGGCGCTAGCGCCCCGATTCAAGCACTTGATAAGAATGAACACAAACTGTTAGAGTGCATCGGATTTGAGGT
CACTTCCATTGATCAACTGATCGCTCGAAGTGGCTTTTCGGCTTCCATCGTAGCTTCGTTATTGTTAAGGATAGAATTGC
AAGGCTACATTAAATCAAGACCTGGCGGTGTTATACGAGTGAAGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(25-229)

DprA winged helix domain (DprA_WH)

(245-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Legionella pneumophila strain ERS1305867

53.925

95.13

0.513
  dprA Vibrio cholerae strain A1552

49.164

97.078

0.477
  dprA Vibrio campbellii strain DS40M4

47.386

99.351

0.471
  dprA Glaesserella parasuis strain SC1401

44.625

99.675

0.445
  dprA Acinetobacter baumannii D1279779

44.027

95.13

0.419
  dprA Acinetobacter baumannii strain A118

43.537

95.455

0.416
  dprA Acinetobacter baylyi ADP1

42.617

96.753

0.412
  dprA Haemophilus influenzae Rd KW20

54.587

70.779

0.386

Multiple sequence alignment