Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   EQJ84_RS20660 Genome accession   NZ_CP035191
Coordinates   4001865..4002659 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain SRCM104011     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3996865..4007659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ84_RS20635 (EQJ84_20635) rocD 3997439..3998644 (-) 1206 WP_047183487.1 ornithine aminotransferase -
  EQJ84_RS20640 (EQJ84_20640) rocR 3998885..4000270 (+) 1386 WP_041850282.1 arginine utilization regulatory protein RocR -
  EQJ84_RS20645 (EQJ84_20645) - 4000252..4000410 (-) 159 Protein_3992 ATP-binding protein -
  EQJ84_RS20650 (EQJ84_20650) - 4000432..4000561 (-) 130 Protein_3993 hypothetical protein -
  EQJ84_RS20655 (EQJ84_20655) htrA 4000581..4001783 (-) 1203 WP_041850281.1 serine protease HtrC Regulator
  EQJ84_RS20660 (EQJ84_20660) vicX 4001865..4002659 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  EQJ84_RS20665 (EQJ84_20665) walI 4002681..4003523 (-) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  EQJ84_RS20670 (EQJ84_20670) walH 4003510..4004877 (-) 1368 WP_041850604.1 WalRK two-component regulatory system regulator WalH -
  EQJ84_RS20675 (EQJ84_20675) walK 4004867..4006702 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  EQJ84_RS20680 (EQJ84_20680) walR 4006710..4007417 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=294155 EQJ84_RS20660 WP_003226939.1 4001865..4002659(-) (vicX) [Bacillus subtilis strain SRCM104011]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=294155 EQJ84_RS20660 WP_003226939.1 4001865..4002659(-) (vicX) [Bacillus subtilis strain SRCM104011]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTGCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCAATGGAGAC
GGTGAAGTCGTTTGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCGGAACCGATGTTTTATGTGTTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTATTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGGAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACCGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53

Multiple sequence alignment