Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DKK66_RS05990 Genome accession   NZ_CP029539
Coordinates   1244147..1245229 (+) Length   360 a.a.
NCBI ID   WP_131356242.1    Uniprot ID   A0A4P6TGI9
Organism   Aquitalea sp. USM4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1239147..1250229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKK66_RS05965 (DKK66_05960) rsmB 1239229..1240482 (-) 1254 WP_131356234.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  DKK66_RS05970 (DKK66_05965) htpX 1240595..1241446 (-) 852 WP_062788386.1 zinc metalloprotease HtpX -
  DKK66_RS05975 (DKK66_05970) fmt 1241481..1242401 (-) 921 WP_131356236.1 methionyl-tRNA formyltransferase -
  DKK66_RS05980 (DKK66_05975) def 1242484..1242987 (-) 504 WP_131360865.1 peptide deformylase -
  DKK66_RS05985 (DKK66_05980) - 1243113..1244150 (+) 1038 WP_131356239.1 LysM peptidoglycan-binding domain-containing protein -
  DKK66_RS05990 (DKK66_05985) dprA 1244147..1245229 (+) 1083 WP_131356242.1 DNA-processing protein DprA Machinery gene
  DKK66_RS05995 (DKK66_05990) - 1245271..1245729 (+) 459 WP_045846407.1 DUF494 family protein -
  DKK66_RS06000 (DKK66_05995) topA 1245899..1248196 (+) 2298 WP_045846408.1 type I DNA topoisomerase -
  DKK66_RS06005 (DKK66_06000) - 1248490..1248888 (+) 399 WP_045846409.1 hypothetical protein -
  DKK66_RS06010 (DKK66_06005) - 1248879..1249259 (-) 381 WP_131356245.1 DUF1622 domain-containing protein -
  DKK66_RS06015 (DKK66_06010) - 1249385..1250134 (+) 750 WP_131356248.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 37538.86 Da        Isoelectric Point: 5.6063

>NTDB_id=293355 DKK66_RS05990 WP_131356242.1 1244147..1245229(+) (dprA) [Aquitalea sp. USM4]
MSQQNEDWLLLALTPGIGPAGFLKLIAAFGSASHVLAASTAQTAPLIGQDIAQALRERRAEADAKAALAWAEQENCSLLS
LLDDDYPQALAETAAPPPLLFARGQRALLQHPMLAMVGSRSATPPGKQIAEDFARQLSAHGYTIVSGLASGIDAAAHRGA
LQESGSTIAVIGTGIDRVYPASNRELAHQIGRAGLILSEFPLGAGPVAGHFPRRNRIIAGLSRGCLVVEANINSGSLITA
RLAAESGREVMAVPGSIHNPQARGCHRLLRDGARLIETVDDVLDEIGRVASPPITPAATAGENQPVDDPILAIMGFDPVS
SEALATQLGLTQGEVYAMLLELELAGKLTSLPGGRVQRLV

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=293355 DKK66_RS05990 WP_131356242.1 1244147..1245229(+) (dprA) [Aquitalea sp. USM4]
ATGAGCCAGCAGAACGAAGACTGGCTGCTGCTGGCCCTGACACCGGGTATAGGCCCGGCCGGTTTTCTCAAGCTGATTGC
CGCCTTTGGCTCCGCCAGCCATGTGCTGGCGGCCAGCACCGCACAAACCGCACCGCTGATCGGGCAGGACATCGCCCAGG
CACTGCGCGAGAGACGTGCCGAGGCGGACGCCAAGGCGGCCCTCGCCTGGGCCGAACAAGAGAATTGCAGCCTGCTGAGC
CTGCTGGATGACGATTACCCGCAAGCACTGGCAGAAACTGCCGCCCCGCCTCCGCTGCTGTTTGCCCGCGGGCAGCGCGC
CTTGTTGCAACACCCGATGCTGGCCATGGTAGGCAGCCGCAGTGCCACCCCGCCGGGCAAGCAGATCGCCGAGGACTTTG
CCCGCCAGCTATCCGCCCACGGTTACACCATCGTCAGTGGCCTCGCCAGTGGCATTGATGCCGCCGCACACCGTGGTGCC
TTGCAGGAATCAGGCTCCACCATTGCCGTCATCGGCACCGGGATTGACCGGGTGTATCCGGCCAGCAACCGCGAGCTTGC
CCATCAGATCGGCCGCGCAGGCCTGATTTTGTCCGAATTTCCGCTTGGTGCCGGTCCGGTTGCCGGCCATTTCCCGCGCC
GCAACCGCATCATCGCAGGCTTGTCCCGCGGCTGTCTGGTAGTGGAAGCCAATATCAATTCCGGCTCGCTGATTACCGCG
CGGCTGGCTGCAGAAAGCGGGCGCGAGGTCATGGCGGTTCCCGGTTCGATTCACAACCCGCAAGCGCGCGGCTGTCACCG
CTTGCTGCGTGATGGTGCCCGCCTGATCGAAACCGTGGATGACGTGCTGGATGAAATCGGCCGGGTGGCTTCGCCCCCGA
TCACGCCGGCAGCGACAGCAGGGGAAAATCAGCCGGTGGACGACCCGATTCTGGCGATCATGGGCTTTGATCCGGTGAGC
AGCGAGGCGCTGGCAACACAACTCGGGTTGACGCAGGGAGAGGTTTACGCGATGCTGCTGGAGCTGGAACTTGCCGGCAA
GCTGACCAGCCTGCCCGGCGGACGGGTTCAGCGACTGGTCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-277)

DprA winged helix domain (DprA_WH)

(297-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P6TGI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis MC58

49.614

100

0.536
  dprA Neisseria meningitidis strain C311

49.614

100

0.536
  dprA Neisseria gonorrhoeae strain FA1090

48.32

100

0.519
  dprA Neisseria gonorrhoeae MS11

47.792

100

0.511
  dprA Vibrio campbellii strain DS40M4

40.921

100

0.419
  dprA Legionella pneumophila strain ERS1305867

47.826

83.056

0.397
  dprA Thermus thermophilus HB27

38.997

99.722

0.389
  dprA Vibrio cholerae strain A1552

37.741

100

0.381
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.95

100

0.381

Multiple sequence alignment