Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   DKE43_RS11905 Genome accession   NZ_CP029464
Coordinates   2265774..2266370 (+) Length   198 a.a.
NCBI ID   WP_034660066.1    Uniprot ID   -
Organism   Bacillus pumilus strain ZB201701     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2260774..2271370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKE43_RS11885 (DKE43_11930) nikA 2261091..2262722 (-) 1632 WP_106036497.1 nickel ABC transporter substrate-binding protein -
  DKE43_RS11890 (DKE43_11935) - 2262845..2264014 (-) 1170 WP_066030336.1 macrolide family glycosyltransferase -
  DKE43_RS11895 (DKE43_11940) - 2264183..2265073 (-) 891 WP_240667884.1 ABC transporter substrate-binding protein -
  DKE43_RS11905 (DKE43_11950) clpP 2265774..2266370 (+) 597 WP_034660066.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  DKE43_RS11910 (DKE43_11955) - 2266430..2267008 (-) 579 WP_034660067.1 TIGR00730 family Rossman fold protein -
  DKE43_RS11915 (DKE43_11960) - 2267145..2267486 (+) 342 WP_127687165.1 MazG-like family protein -
  DKE43_RS11920 (DKE43_11965) - 2267515..2269137 (-) 1623 WP_127687166.1 SulP family inorganic anion transporter -
  DKE43_RS11925 (DKE43_11970) - 2269175..2269756 (-) 582 WP_034660712.1 carbonic anhydrase -
  DKE43_RS11930 (DKE43_11975) - 2270310..2271287 (+) 978 WP_127687168.1 D-glycerate dehydrogenase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21832.99 Da        Isoelectric Point: 4.6141

>NTDB_id=292679 DKE43_RS11905 WP_034660066.1 2265774..2266370(+) (clpP) [Bacillus pumilus strain ZB201701]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALEYGLIDKVLTRNSEEQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=292679 DKE43_RS11905 WP_034660066.1 2265774..2266370(+) (clpP) [Bacillus pumilus strain ZB201701]
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG
AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCGATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACCATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGTTATGCCCTTCCAAACAGTGAAGTCATGATTCACCAACCACTAGGTGGTGCCCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG
CCAATTGAAGTGATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTGAATACGGACTTATTGA
CAAAGTCTTGACCCGTAATTCAGAAGAACAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

92.893

99.495

0.924
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.063

96.465

0.657
  clpP Streptococcus thermophilus LMG 18311

59.067

97.475

0.576
  clpP Streptococcus thermophilus LMD-9

59.067

97.475

0.576
  clpP Lactococcus lactis subsp. cremoris KW2

57.216

97.98

0.561
  clpP Streptococcus pneumoniae D39

56.701

97.98

0.556
  clpP Streptococcus pneumoniae Rx1

56.701

97.98

0.556
  clpP Streptococcus pneumoniae R6

56.701

97.98

0.556
  clpP Streptococcus pneumoniae TIGR4

56.701

97.98

0.556
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.155

97.98

0.54
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.639

97.98

0.535

Multiple sequence alignment