Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   DF184_RS00760 Genome accession   NZ_CP029398
Coordinates   118028..118321 (+) Length   97 a.a.
NCBI ID   WP_044752980.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 113028..123321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS00730 (DF184_00730) - 114050..114415 (+) 366 WP_002936568.1 DUF1033 family protein -
  DF184_RS00735 (DF184_00735) - 114450..115400 (-) 951 WP_109371021.1 S66 peptidase family protein -
  DF184_RS00740 (DF184_00740) comYA 115486..116436 (+) 951 WP_024410900.1 competence type IV pilus ATPase ComGA Machinery gene
  DF184_RS00745 (DF184_00745) comYB 116348..117385 (+) 1038 WP_275425327.1 competence type IV pilus assembly protein ComGB Machinery gene
  DF184_RS00750 (DF184_00750) comYC 117387..117668 (+) 282 WP_024385124.1 competence type IV pilus major pilin ComGC Machinery gene
  DF184_RS00755 (DF184_00755) comGD 117649..118056 (+) 408 WP_109371023.1 competence type IV pilus minor pilin ComGD -
  DF184_RS00760 (DF184_00760) comYE 118028..118321 (+) 294 WP_044752980.1 competence type IV pilus minor pilin ComGE Machinery gene
  DF184_RS00765 (DF184_00765) comGF/cglF 118308..118742 (+) 435 WP_052506926.1 competence type IV pilus minor pilin ComGF Machinery gene
  DF184_RS00770 (DF184_00770) comGG 118720..119130 (+) 411 WP_109371025.1 competence type IV pilus minor pilin ComGG -
  DF184_RS00775 (DF184_00775) comYH 119187..120140 (+) 954 WP_109371027.1 class I SAM-dependent methyltransferase Machinery gene
  DF184_RS00780 (DF184_00780) - 120190..121377 (+) 1188 WP_014637319.1 acetate kinase -
  DF184_RS00785 (DF184_00785) - 121638..122189 (+) 552 WP_014637320.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10813.71 Da        Isoelectric Point: 9.0978

>NTDB_id=292258 DF184_RS00760 WP_044752980.1 118028..118321(+) (comYE) [Streptococcus suis strain HN105]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAWELEQQEILNLAQMAVQTEQDNLALNGVTVQVQRTAD
KIIVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=292258 DF184_RS00760 WP_044752980.1 118028..118321(+) (comYE) [Streptococcus suis strain HN105]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACCCTAGTGACTAT
TTGCAGCCTGATTTTATCAGCGGTGGATGCAGGTCGTAGGCGACAGGCTTGGGAATTGGAACAACAGGAGATTCTCAATC
TAGCACAGATGGCTGTTCAAACCGAGCAAGATAACCTAGCCTTAAACGGTGTTACAGTTCAGGTTCAACGAACAGCGGAT
AAGATCATTGTTTTCCACGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

55.67

100

0.557
  comYE Streptococcus mutans UA159

55.67

100

0.557
  comGE/cglE Streptococcus mitis NCTC 12261

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis SK321

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae R6

39.13

94.845

0.371
  comGE/cglE Streptococcus pneumoniae TIGR4

39.13

94.845

0.371
  comGE/cglE Streptococcus pneumoniae Rx1

39.13

94.845

0.371
  comGE/cglE Streptococcus pneumoniae D39

39.13

94.845

0.371

Multiple sequence alignment