Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | DF184_RS00775 | Genome accession | NZ_CP029398 |
| Coordinates | 119187..120140 (+) | Length | 317 a.a. |
| NCBI ID | WP_109371027.1 | Uniprot ID | - |
| Organism | Streptococcus suis strain HN105 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 114187..125140
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DF184_RS00735 (DF184_00735) | - | 114450..115400 (-) | 951 | WP_109371021.1 | S66 peptidase family protein | - |
| DF184_RS00740 (DF184_00740) | comYA | 115486..116436 (+) | 951 | WP_024410900.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DF184_RS00745 (DF184_00745) | comYB | 116348..117385 (+) | 1038 | WP_275425327.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DF184_RS00750 (DF184_00750) | comYC | 117387..117668 (+) | 282 | WP_024385124.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DF184_RS00755 (DF184_00755) | comGD | 117649..118056 (+) | 408 | WP_109371023.1 | competence type IV pilus minor pilin ComGD | - |
| DF184_RS00760 (DF184_00760) | comYE | 118028..118321 (+) | 294 | WP_044752980.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| DF184_RS00765 (DF184_00765) | comGF/cglF | 118308..118742 (+) | 435 | WP_052506926.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DF184_RS00770 (DF184_00770) | comGG | 118720..119130 (+) | 411 | WP_109371025.1 | competence type IV pilus minor pilin ComGG | - |
| DF184_RS00775 (DF184_00775) | comYH | 119187..120140 (+) | 954 | WP_109371027.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DF184_RS00780 (DF184_00780) | - | 120190..121377 (+) | 1188 | WP_014637319.1 | acetate kinase | - |
| DF184_RS00785 (DF184_00785) | - | 121638..122189 (+) | 552 | WP_014637320.1 | folate family ECF transporter S component | - |
| DF184_RS00790 (DF184_00790) | - | 122245..123501 (+) | 1257 | WP_024401511.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| DF184_RS00795 (DF184_00795) | pepA | 123546..124607 (-) | 1062 | WP_024409100.1 | glutamyl aminopeptidase | - |
| DF184_RS00800 (DF184_00800) | - | 124754..125038 (+) | 285 | WP_024409101.1 | DUF4651 domain-containing protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35789.94 Da Isoelectric Point: 4.4519
>NTDB_id=292260 DF184_RS00775 WP_109371027.1 119187..120140(+) (comYH) [Streptococcus suis strain HN105]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVANQHETDLIINNNKTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKDLDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLMPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVANQHETDLIINNNKTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKDLDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLMPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=292260 DF184_RS00775 WP_109371027.1 119187..120140(+) (comYH) [Streptococcus suis strain HN105]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTAATCAGCATGAGACGGACCTTATTATCAATAATAACA
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTACCAATTCCTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTATAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTTAACGCCAGTCAGAAAG
ACTTGGACTATCTGGGGATTGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTCGCCAGCCCAAATGAACATACCTACGCCCATCATTTACTCA
TGGAACAATCCCTGAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGTTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTACCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGATGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTAATCAGCATGAGACGGACCTTATTATCAATAATAACA
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTACCAATTCCTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTATAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTTAACGCCAGTCAGAAAG
ACTTGGACTATCTGGGGATTGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTCGCCAGCCCAAATGAACATACCTACGCCCATCATTTACTCA
TGGAACAATCCCTGAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGTTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTACCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGATGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
61.076 |
99.685 |
0.609 |
| comYH | Streptococcus mutans UA159 |
60.759 |
99.685 |
0.606 |