Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DJ533_RS03765 Genome accession   NZ_CP029397
Coordinates   296701..297759 (+) Length   352 a.a.
NCBI ID   WP_065993307.1    Uniprot ID   A0A2S2FBT2
Organism   Acinetobacter defluvii strain WCHA30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 291701..302759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ533_RS03755 (DJ533_03765) - 292094..293683 (+) 1590 WP_065993305.1 TerC family protein -
  DJ533_RS03760 (DJ533_03770) ponA 293959..296538 (-) 2580 WP_065993306.1 penicillin-binding protein PBP1a -
  DJ533_RS03765 (DJ533_03775) comM 296701..297759 (+) 1059 WP_065993307.1 pilus assembly protein PilM Machinery gene
  DJ533_RS03770 (DJ533_03780) pilN 297759..298391 (+) 633 WP_065993308.1 PilN domain-containing protein Machinery gene
  DJ533_RS03775 (DJ533_03785) pilO 298388..299170 (+) 783 WP_065993309.1 type 4a pilus biogenesis protein PilO Machinery gene
  DJ533_RS03780 (DJ533_03790) pilP 299173..299700 (+) 528 WP_065993310.1 pilus assembly protein PilP Machinery gene
  DJ533_RS03785 (DJ533_03795) pilQ 299766..301885 (+) 2120 Protein_241 type IV pilus secretin PilQ -
  DJ533_RS03790 (DJ533_03800) aroK 301922..302464 (+) 543 WP_065993311.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38989.59 Da        Isoelectric Point: 4.3997

>NTDB_id=292210 DJ533_RS03765 WP_065993307.1 296701..297759(+) (comM) [Acinetobacter defluvii strain WCHA30]
MLRISRKQAKGLIGVDISSTSVKILELSVKNGRYWVESYGLSPLLDGSVVEKNILNPEAVSDALERAVNIANPQSMNAAV
AVTNSMVIQKVIEMDADMNDDEREVQIRMDAEQYIPFPLDEVSLDFEVLPDKLPNPNRVNVVLVATRTENVDARVEVLEM
TGLTAKVVDTESYCMERAFEVFSDTLPIGANIVGILDIGHTMTTLSVMQNGQIIYTREQVFGGKQLTQDVQSRYGLSYEE
AGRAKKDRTLPDDYETEVLMPFLEAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTVANPFL
QMGFSPQIDLKKIENDAPSLMVACGLAMRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=292210 DJ533_RS03765 WP_065993307.1 296701..297759(+) (comM) [Acinetobacter defluvii strain WCHA30]
GTGCTTAGAATCAGTCGTAAGCAAGCTAAGGGGCTTATAGGGGTGGATATTAGTTCGACCTCTGTAAAGATATTAGAACT
TTCTGTTAAAAACGGTCGTTATTGGGTGGAAAGCTATGGATTAAGTCCATTGTTAGACGGAAGTGTGGTGGAGAAGAATA
TTCTCAACCCAGAGGCAGTATCAGATGCTTTAGAGCGTGCGGTGAATATTGCAAATCCCCAATCTATGAATGCGGCTGTT
GCAGTAACCAACTCCATGGTGATTCAAAAAGTCATCGAAATGGATGCAGACATGAACGATGATGAGCGCGAAGTTCAAAT
TCGTATGGATGCAGAGCAATATATTCCATTTCCATTGGATGAGGTGAGTCTAGATTTTGAGGTTTTACCTGATAAGCTGC
CGAACCCAAATCGAGTGAATGTAGTTCTTGTCGCAACACGGACTGAGAATGTCGATGCACGGGTTGAAGTGCTTGAGATG
ACAGGTTTGACTGCAAAAGTGGTCGATACAGAAAGCTATTGTATGGAACGTGCTTTTGAAGTGTTCTCAGATACGCTACC
CATCGGTGCCAATATAGTCGGTATCTTAGATATTGGTCATACCATGACTACGCTTTCAGTTATGCAAAATGGTCAGATTA
TCTATACACGAGAACAAGTCTTTGGTGGTAAGCAGCTTACTCAGGATGTACAAAGCCGTTATGGTTTGTCTTATGAAGAA
GCGGGTCGTGCGAAAAAAGATCGAACCTTGCCTGATGACTATGAAACTGAAGTTCTTATGCCATTTTTGGAAGCTGTTGT
TCAACAAGCAGCACGATCTCTACAATTCTTTTTCTCCTCTTCGCAGTTTAATGAAATTGATCATATTTTGCTGGCTGGGG
GGAATGCGAATATTCCTGGACTTGCGAAATTATTACAACAAAAACTGGGTTATCGTGTAACTGTAGCAAACCCATTTTTA
CAAATGGGTTTTTCACCCCAAATCGACCTAAAAAAAATAGAAAATGATGCGCCATCGTTAATGGTTGCGTGTGGCTTAGC
AATGAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S2FBT2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

82.386

100

0.824
  pilM Acinetobacter baumannii D1279779

81.818

100

0.818
  comM Acinetobacter baylyi ADP1

78.409

100

0.784
  pilM Legionella pneumophila strain ERS1305867

41.69

100

0.42

Multiple sequence alignment