Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilQ   Type   Machinery gene
Locus tag   DIW83_RS01515 Genome accession   NZ_CP029351
Coordinates   315420..317585 (+) Length   721 a.a.
NCBI ID   WP_016803751.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain NCTC 8102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 310420..322585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIW83_RS01495 (DIW83_01495) comM 312380..313438 (+) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  DIW83_RS01500 (DIW83_01500) pilN 313438..314082 (+) 645 WP_006581060.1 PilN domain-containing protein Machinery gene
  DIW83_RS01505 (DIW83_01505) pilO 314079..314819 (+) 741 WP_016803752.1 type 4a pilus biogenesis protein PilO Machinery gene
  DIW83_RS01510 (DIW83_01510) pilP 314830..315357 (+) 528 WP_006582542.1 pilus assembly protein PilP Machinery gene
  DIW83_RS01515 (DIW83_01515) pilQ 315420..317585 (+) 2166 WP_016803751.1 type IV pilus secretin PilQ family protein Machinery gene
  DIW83_RS01520 (DIW83_01520) aroK 317597..318166 (+) 570 WP_002051689.1 shikimate kinase AroK -
  DIW83_RS01525 (DIW83_01525) aroB 318195..319277 (+) 1083 WP_016803750.1 3-dehydroquinate synthase -
  DIW83_RS01530 (DIW83_01530) - 319293..320168 (+) 876 WP_004884723.1 hypothetical protein -

Sequence


Protein


Download         Length: 721 a.a.        Molecular weight: 77850.24 Da        Isoelectric Point: 6.5404

>NTDB_id=291883 DIW83_RS01515 WP_016803751.1 315420..317585(+) (pilQ) [Acinetobacter nosocomialis strain NCTC 8102]
MNQVFRQFSMGAVAVAIMQAASAQVSMTNIVPTQVAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQSLKQSKI
AVATNEASSVDVTSDDQRSRLTVNLKDAGAFITRVEGNTFILKINSVQPNNKPVPVVTAQPQGISNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTLGTKIPAHLARRLNVNDFATPVSSIDAYNDKGAGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAKAGDIMGLITQGSNNSNGLQHTSGGGTSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGITNNKNLLVGGSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADG
YGEVISTPKVMTADKQTAKVATGQQVPYQTTTNSAAGSTATTSFKDALLSLNVTPSITPDGKIQMKLDISKDSVAGAAPN
GELILNKNNINTNVLVDNGETVILGGVFEQTTTNSQTKVPFFGDIPIVGHLFRKDVKSDDKQELLIFVTPRIVNDTLARN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=291883 DIW83_RS01515 WP_016803751.1 315420..317585(+) (pilQ) [Acinetobacter nosocomialis strain NCTC 8102]
ATGAATCAGGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCTGTTGCAATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATAGTACCAACGCAAGTTGCAGGTCAGGGCACAGAAATTAGAGTTATGTTTAATGGATTGCCACCACAGCCAC
AGGCTTACCAACTTGAAAATCCGTCACGTTTAATATTAGATTTTGATAAAGCTCAACAAAGTTTAAAACAGTCTAAAATT
GCTGTTGCAACCAATGAAGCAAGCTCTGTAGATGTAACTTCAGATGATCAACGTTCACGTTTGACTGTAAATTTAAAAGA
TGCTGGAGCGTTTATAACACGTGTGGAAGGTAATACTTTTATTTTAAAAATTAATTCGGTCCAACCGAATAATAAACCTG
TACCAGTAGTTACTGCACAACCACAAGGTATTTCAAACATTGGATTTCAGCGTGGTAGTCAGGGAGAAGGTTTAGTTGTT
GTGGATCTTTTGGGAAGTAATACACCTGTAGATGTTCAACAACAAGGCAGTAAAGTTGTTATAAGAACTTTAGGTACAAA
AATTCCGGCACATTTGGCGCGTCGTCTAAATGTAAATGATTTTGCAACACCAGTCTCAAGTATTGATGCTTATAATGATA
AAGGTGCTGGTGTAATTACTATTCAGTCATCTGGTAGCTATGAATACATGGCATATCAGGCTGAAAATAAGCTCACAATC
AGTTTGAAACGACCACAAGATAAAAATGTAACTTCTTTATATAAAACGCCAAATTATTCTGGAAATAAGCTTTCGCTAGA
TTTTCAAGACATCGAAGTGCGCCGTGTTTTACAGCTCCTTGCTGATTTTACGGGAATCAATATGGTGGCTGCTGATAGTG
TGCAAGGTAATATCACGCTACGTTTGAAAGATGTACCTTGGGATCAGGCTCTGGATATTATTTTAAAAACGAAAAATCTT
GATAAACGTCGTAATGGGAATGTGATTTGGATTGCTCCTGTTGCAGAGTTGATTAAAGCGGAAGAGGAAGAAGCGAAAGC
TGTGGCGCAAAGTGTAAAACTTGCTCCGTTACAGACAGAGTATATTCAACTTAAATACGCTAAAGCTGGCGATATTATGG
GTTTAATTACTCAAGGCTCAAATAATAGTAATGGCTTACAACATACTTCTGGTGGAGGAACTTCAACTTCAACCAATTTA
AATACTGGCGTTGATAGTCTTGGGAATAATGTGGGTAGTTTACTTAGCCCTCGCGGCACCATTACTCAAGATGACCGAAC
TAATACTCTTATTATTAATGATACTGCTCAGTCGATTGATCAAATTCGAAAAATGATTGACTTGCTTGATGTGCAAGTTA
AACAGGTCATGGTTGAAGCACGTATTGTGAGAGCGTCTACGTCGTTTACCAAAGAACTTGGTGTGAAGTGGGGCATTCTT
TCGCAAGGTATTACCAATAATAAAAATTTGTTGGTTGGTGGTAGTGAAACAACTTTATGGAATCTGCGCGAACCTAAAAA
AGATGAAACTACAGGTGGCTATAAATATACGATTGAGCGCCCAGATAATTTAAACGTTGATTTGGGGGTTTCTAATCCTG
CCGGTAGTATTGCCTTTGGTCTTATTAGTATGTCGGACTTCATGTTGGATCTTGAGCTCTCAGCTTTACAAGCCGATGGT
TATGGTGAAGTAATTTCAACGCCTAAAGTGATGACCGCCGATAAGCAAACTGCGAAAGTAGCAACAGGTCAACAAGTTCC
ATATCAAACTACAACAAATTCTGCTGCAGGCTCAACAGCCACAACATCATTTAAAGATGCATTACTAAGCCTAAATGTAA
CTCCAAGTATTACGCCTGACGGTAAGATTCAAATGAAATTGGATATTTCTAAGGACTCTGTAGCAGGTGCGGCCCCAAAT
GGTGAATTAATTCTGAATAAGAATAATATTAATACCAATGTGCTGGTTGATAATGGAGAGACCGTTATTTTAGGTGGTGT
ATTCGAGCAAACAACGACGAATTCTCAAACCAAAGTTCCGTTTTTTGGTGATATTCCTATTGTAGGGCATTTATTTAGAA
AAGATGTAAAGTCTGATGATAAGCAAGAATTATTGATTTTCGTAACACCACGAATTGTTAATGACACTTTAGCTAGAAAT
CATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

97.087

100

0.971

  pilQ Acinetobacter baumannii strain A118

96.949

100

0.969

  comQ Acinetobacter baylyi ADP1

74.965

100

0.752

  pilQ Pseudomonas aeruginosa PAK

39.566

100

0.405


Multiple sequence alignment