Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DG474_RS01305 Genome accession   NZ_CP029257
Coordinates   245768..247747 (+) Length   659 a.a.
NCBI ID   WP_255778436.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 240768..252747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS01275 (DG474_01285) - 241215..241445 (+) 231 WP_002892633.1 DUF1146 family protein -
  DG474_RS01280 (DG474_01290) murA 241469..242752 (+) 1284 WP_000411918.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DG474_RS01285 (DG474_01295) - 242739..242933 (+) 195 WP_000739701.1 DNA-directed RNA polymerase subunit beta -
  DG474_RS01290 (DG474_01300) endA 242974..243798 (+) 825 WP_084917529.1 DNA/RNA non-specific endonuclease Machinery gene
  DG474_RS01295 (DG474_01305) - 243934..245265 (+) 1332 WP_255778434.1 hemolysin family protein -
  DG474_RS01305 (DG474_01315) amiA 245768..247747 (+) 1980 WP_255778436.1 peptide ABC transporter substrate-binding protein Regulator
  DG474_RS01310 (DG474_01320) amiC 247814..249310 (+) 1497 WP_000759894.1 ABC transporter permease Regulator
  DG474_RS01315 (DG474_01325) amiD 249310..250236 (+) 927 WP_000103694.1 oligopeptide ABC transporter permease OppC Regulator
  DG474_RS01320 (DG474_01330) amiE 250245..251312 (+) 1068 WP_255778440.1 ABC transporter ATP-binding protein Regulator
  DG474_RS01325 (DG474_01335) amiF 251323..252252 (+) 930 WP_071851870.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72677.70 Da        Isoelectric Point: 4.7583

>NTDB_id=291400 DG474_RS01305 WP_255778436.1 245768..247747(+) (amiA) [Streptococcus oralis strain CCUG 53468]
MKKSRVFVAAGVALLAAGVLAACGSSKSSDSTAPKNYGYVYTADPETLDYLISGKQSTKIATSNGIDGLFTNDQYGNLVP
AVAEDWSVSKDGLTYTYKIRKGVKWFTSDGEEYAEVTAKDFVNGLKHAADKKSEALYLAEDSVKGLADYTAGNNKDFSSV
GVKAVDDYTLEYTLNQPEPYWNSKMAYSIFWPLNEDFEKSKGADFGKATDPTSLLYNGPFLLKGLTAKSSIEFAKNENYW
DKDNVHIDKVALAFYDGSDQESIERNFTSGAYSYARLFPTSSNYSKVEETYKENIYYNPSGPGIGGLGVNIDRQGYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTSYSAQINGKEGAPLAVRNLFVKPGFVSAGEKTFGDLVTEKMAAYGDEWKN
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDIPVDQTSKNYIARIQSFKQSVETVLGEGNVVIDIQQISKDE
LNNITYYAASAAAEDWDLSGAVGWNPDYEDPSTYLDILKTTNAEQTKTYMGYEGADNAAAAQVGLKEYDKLVDEAAKETN
DLNVRYEKYAAAQAWLTDSSLFLPAMSSSGAAPIISRVVPFTASYSQSGDKGSDVYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELANHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=291400 DG474_RS01305 WP_255778436.1 245768..247747(+) (amiA) [Streptococcus oralis strain CCUG 53468]
ATGAAAAAAAGTAGAGTATTTGTTGCAGCAGGAGTTGCTTTATTAGCAGCAGGAGTACTAGCTGCTTGCGGTTCTTCAAA
ATCATCTGATTCAACAGCGCCAAAAAATTATGGTTATGTTTATACAGCTGATCCAGAAACGTTGGATTACCTCATTTCAG
GGAAACAAAGTACTAAGATTGCCACTTCAAATGGTATCGATGGTCTCTTTACAAATGATCAATACGGGAACCTAGTTCCT
GCAGTTGCAGAAGACTGGTCAGTTTCAAAAGATGGTTTGACCTATACCTACAAGATTCGTAAAGGTGTCAAATGGTTTAC
ATCTGACGGAGAAGAGTACGCAGAAGTTACTGCTAAGGACTTTGTAAATGGTTTGAAACACGCAGCTGATAAAAAATCAG
AAGCCCTTTATCTAGCAGAAGATTCAGTTAAAGGTCTAGCTGACTATACAGCTGGAAACAATAAAGACTTTTCTTCAGTC
GGTGTAAAGGCAGTTGATGATTATACTCTTGAGTATACTTTGAATCAGCCAGAACCATACTGGAACTCTAAGATGGCCTA
CTCAATCTTCTGGCCATTAAACGAGGATTTTGAAAAATCAAAAGGGGCTGACTTTGGTAAAGCGACTGACCCTACATCCT
TGCTTTACAATGGACCATTCTTGCTGAAAGGTTTGACTGCTAAGTCATCTATCGAGTTCGCTAAGAATGAAAACTACTGG
GACAAAGATAATGTTCATATTGATAAAGTAGCCCTTGCTTTCTATGATGGGTCAGACCAAGAGTCAATTGAACGTAACTT
TACAAGTGGAGCTTATAGCTATGCCCGTCTCTTCCCAACAAGTTCAAACTACTCTAAGGTAGAAGAAACATACAAAGAAA
ATATCTACTACAATCCATCAGGACCTGGTATTGGTGGTTTGGGTGTGAATATTGACCGTCAAGGTTACAAATACACTTCT
AAAACAACTGATGAAGAGAAGACTTCTACCAAGAAAGCCCTTCTTAACAAGGACTTCCGTCAGGCTTTGAACTTCGCCTT
TGACCGTACTTCTTACTCAGCACAAATTAATGGTAAAGAAGGTGCTCCTCTTGCAGTTCGTAACCTCTTTGTGAAACCAG
GTTTTGTCTCTGCAGGTGAAAAAACTTTCGGTGACTTGGTAACTGAAAAGATGGCAGCTTATGGCGATGAATGGAAGAAC
GTAAACTTTGCGGATGGTCAAGATGGACTCTTCAACGCCGATAAAGCCAAAGCTGAATTTGCCAAAGCTAAAACAGCATT
GGAAGCAGAAGGTGTGAAATTCCCTATTCACTTGGATATCCCAGTAGACCAAACATCTAAAAACTATATTGCACGTATCC
AATCCTTCAAACAATCCGTTGAAACAGTACTTGGTGAAGGCAACGTAGTCATTGATATCCAACAAATTTCTAAAGATGAG
TTGAACAACATCACTTACTACGCAGCTAGCGCAGCAGCAGAAGATTGGGATCTTTCAGGTGCTGTTGGATGGAACCCTGA
CTATGAAGATCCATCAACTTACCTTGATATCTTGAAGACAACGAATGCTGAACAAACAAAAACATACATGGGTTATGAAG
GTGCAGATAACGCTGCAGCGGCTCAAGTTGGTTTGAAAGAATACGATAAGTTAGTTGATGAAGCTGCTAAGGAAACTAAC
GACTTAAATGTTCGTTATGAAAAATATGCGGCTGCTCAAGCTTGGTTGACAGACAGCTCACTCTTCTTGCCAGCTATGTC
ATCAAGTGGTGCTGCACCAATCATTTCTCGTGTTGTACCATTCACAGCATCATACAGCCAATCTGGAGATAAGGGCTCAG
ACGTATACTTCAAGTATATTCAGTTACAAGATAAGGTTGTAACAAAAGCTGATTATGAACAAGCTCGTGAAAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGGCTAATCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

67.83

100

0.678
  amiA3 Streptococcus thermophilus LMG 18311

67.576

100

0.677
  amiA3 Streptococcus thermophilus LMD-9

67.424

100

0.675

Multiple sequence alignment