Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   DG474_RS01310 Genome accession   NZ_CP029257
Coordinates   247814..249310 (+) Length   498 a.a.
NCBI ID   WP_000759894.1    Uniprot ID   A0A139PWX2
Organism   Streptococcus oralis strain CCUG 53468     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 242814..254310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS01290 (DG474_01300) endA 242974..243798 (+) 825 WP_084917529.1 DNA/RNA non-specific endonuclease Machinery gene
  DG474_RS01295 (DG474_01305) - 243934..245265 (+) 1332 WP_255778434.1 hemolysin family protein -
  DG474_RS01305 (DG474_01315) amiA 245768..247747 (+) 1980 WP_255778436.1 peptide ABC transporter substrate-binding protein Regulator
  DG474_RS01310 (DG474_01320) amiC 247814..249310 (+) 1497 WP_000759894.1 ABC transporter permease Regulator
  DG474_RS01315 (DG474_01325) amiD 249310..250236 (+) 927 WP_000103694.1 oligopeptide ABC transporter permease OppC Regulator
  DG474_RS01320 (DG474_01330) amiE 250245..251312 (+) 1068 WP_255778440.1 ABC transporter ATP-binding protein Regulator
  DG474_RS01325 (DG474_01335) amiF 251323..252252 (+) 930 WP_071851870.1 ATP-binding cassette domain-containing protein Regulator
  DG474_RS01330 (DG474_01340) - 252341..253780 (-) 1440 WP_255778441.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55743.13 Da        Isoelectric Point: 9.2425

>NTDB_id=291401 DG474_RS01310 WP_000759894.1 247814..249310(+) (amiC) [Streptococcus oralis strain CCUG 53468]
MKKYIFMRVLRSLLSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTPDKRDNYENTVYERMGYIEYYDTKELQERAS
TMDSSVTVDANDTNKAIYEKYINQLGNGWTLGVFSESGQFYATREIPIFERVFKFYSNLIDIDHPNKIQDPENPNLQRYL
RFENDPAIGWSLVGSGTKHKYLLYFNNQFPFVHQNFVNINLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
DIYSRTYKSPSQADAREVANYGKDDPYTATESNYQYPSMIASSAVAGLIGLIISYAIAIPLGSAMARHKNTWIDSFSTGA
LTFLLALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLFVGD
IWMTMLDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=291401 DG474_RS01310 WP_000759894.1 247814..249310(+) (amiC) [Streptococcus oralis strain CCUG 53468]
ATGAAGAAATATATTTTTATGCGTGTATTGCGTTCATTGTTGTCTATTTTCTTGGTGACAACCTTGACATACACAATTAT
TTATACGATGGTTCCTCGAAAATTGATTTTCAAGCAGGATACCAACTATAACAAGATTGCAACGACGCCGGACAAGCGGG
ATAATTATGAAAATACCGTTTATGAACGGATGGGCTATATCGAGTACTACGATACCAAAGAGTTGCAAGAAAGAGCGAGC
ACAATGGACTCATCTGTAACAGTGGATGCCAATGATACCAATAAGGCAATCTATGAAAAATACATCAACCAACTAGGAAA
TGGTTGGACACTCGGTGTGTTCTCAGAAAGTGGTCAATTCTATGCTACGCGTGAAATTCCGATTTTTGAACGTGTTTTCA
AATTCTATTCCAACTTGATTGATATTGATCATCCAAATAAGATTCAAGACCCTGAAAATCCAAACTTGCAACGTTATCTT
CGTTTTGAAAATGACCCTGCTATCGGTTGGTCATTGGTTGGTTCAGGTACAAAACATAAATACCTTTTGTATTTCAACAA
TCAATTCCCATTTGTACACCAAAACTTTGTGAACATTAACTTGGGAGATTCTTACCCAACTTATGCAAACACACCAGTGC
TTCAGGTTATCACACAAGGTCAGGGACAAACTAAGACATCAGAAGTTCAATTCCCTACAGGTAAAAAGACTTCATCAGTA
GATATTTACTCTCGTACTTACAAATCTCCAAGTCAAGCAGATGCGCGTGAAGTAGCCAACTATGGTAAAGACGATCCATA
TACAGCTACAGAAAGCAATTATCAATATCCTTCAATGATCGCAAGCTCAGCGGTTGCTGGTTTGATTGGTTTGATTATTT
CGTATGCGATTGCGATTCCACTTGGATCTGCTATGGCTCGCCACAAGAATACTTGGATTGATAGCTTCTCGACAGGTGCT
CTAACCTTCTTGCTTGCCCTTCCAACGATTGCCTTGGTTTATATCGTGCGCTTGATTGGATCATCTATCGGTCTGCCAGA
TTCATTTCCTATCTTGGGAGCAGGGGACTGGCGTTCATATGTCTTGCCAGCAGTCATTCTAGGTTTGCTGGGTGCACCAA
GTACAGCTATCTGGATTCGTCGTTACATGATCGACTTGCAATCTCAGGACTTCGTTCGTTTTGCTCGTGCAAAAGGTTTG
TCTGAAAAAGAAATTTCAAATAAACACATCTTTAAAAATGCCATGGTTCCTTTGGTTTCAGGTATTCCTGGTGCCGTTAT
CGGGGTTATCGGTGGTGCAACATTGACAGAAACGGTCTTTGCTTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTTA
AGGCATCCAACAACTCAATGGTAGTTGGTCTCGTCTTCATCTTCACATGTATTTCTATCTTCTCACTCTTTGTAGGAGAT
ATCTGGATGACCATGCTTGACCCACGTATTAAATTGACAGAGAAAGGGGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A139PWX2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.707

100

0.767
  amiC Streptococcus thermophilus LMG 18311

76.104

100

0.761
  amiC Streptococcus thermophilus LMD-9

75.904

100

0.759

Multiple sequence alignment