Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   DG474_RS01325 Genome accession   NZ_CP029257
Coordinates   251323..252252 (+) Length   309 a.a.
NCBI ID   WP_071851870.1    Uniprot ID   A0A1L8Q3A7
Organism   Streptococcus oralis strain CCUG 53468     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 246323..257252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS01310 (DG474_01320) amiC 247814..249310 (+) 1497 WP_000759894.1 ABC transporter permease Regulator
  DG474_RS01315 (DG474_01325) amiD 249310..250236 (+) 927 WP_000103694.1 oligopeptide ABC transporter permease OppC Regulator
  DG474_RS01320 (DG474_01330) amiE 250245..251312 (+) 1068 WP_255778440.1 ABC transporter ATP-binding protein Regulator
  DG474_RS01325 (DG474_01335) amiF 251323..252252 (+) 930 WP_071851870.1 ATP-binding cassette domain-containing protein Regulator
  DG474_RS01330 (DG474_01340) - 252341..253780 (-) 1440 WP_255778441.1 TrkH family potassium uptake protein -
  DG474_RS01335 (DG474_01345) trkA 253784..255133 (-) 1350 WP_255778442.1 Trk system potassium transporter TrkA -
  DG474_RS01340 (DG474_01355) - 255533..256036 (+) 504 WP_255778443.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  DG474_RS01345 (DG474_01360) - 256448..257011 (+) 564 WP_255778445.1 ECF transporter S component -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35066.34 Da        Isoelectric Point: 7.6626

>NTDB_id=291404 DG474_RS01325 WP_071851870.1 251323..252252(+) (amiF) [Streptococcus oralis strain CCUG 53468]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGHKINGKKSHK
ESSDLIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEDRKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAELARYKKALKK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=291404 DG474_RS01325 WP_071851870.1 251323..252252(+) (amiF) [Streptococcus oralis strain CCUG 53468]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCAGTTAAAAA
CGCAAACTTCTTTATCAACAAGGGAGAAACTTTCTCTCTTGTTGGTGAGTCTGGTAGTGGGAAAACAACGATTGGTCGTG
CCATTATTGGTTTAAATAATACTAGTAAAGGTGAAATCATCTTTGATGGTCATAAGATTAATGGGAAAAAATCTCATAAG
GAATCATCAGATTTGATCCGTCGCATCCAGATGATTTTCCAGGACCCTGCAGCTAGCTTGAATGAGCGTGCAACAGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTATCACTTGTTTAAAGATGAAGAAGATCGAAAAGAAAAAGTTCAAAAGATGA
TTCATGAAGTTGGGCTTTTGAAAGAACACTTGACCCGTTACCCACACGAGTTTTCTGGTGGTCAACGTCAGCGTATCGGG
ATTGCCCGTGCTCTTGTGATGGAACCTGATTTCGTTATTGCGGATGAGCCAATTTCAGCCTTGGACGTGTCAGTGCGTGC
GCAAGTCTTGAACTTGCTCAAGAAGTTCCAAAAAGAGTTGGGCTTGACTTATCTCTTTATCGCGCATGACTTGTCAGTTG
TTCGCTTTATCTCAGATCGTATCGCAGTTATCTATAAGGGAGTTATCGTCGAAGTGGCGGAGACAGAGGAGTTGTTTAAC
AATCCTGTCCATCCATACACTCAAGCACTTCTATCTGCTGTACCGATTCCAGATCCAATCTTGGAACGCAAGAAGGTCTT
GAAAGTTTACGATCCTGACCAACATGACTATGAGACAGATAAGCCATCTATGGTAGAAATTCGTCCAGGTCACTATGTTT
GGGCCAATCAAGCAGAACTTGCTCGTTACAAGAAAGCTCTTAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L8Q3A7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

85.437

100

0.854
  amiF Streptococcus thermophilus LMG 18311

84.466

100

0.845
  amiF Streptococcus thermophilus LMD-9

84.142

100

0.841

Multiple sequence alignment