Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DG474_RS01315 Genome accession   NZ_CP029257
Coordinates   249310..250236 (+) Length   308 a.a.
NCBI ID   WP_000103694.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 244310..255236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS01305 (DG474_01315) amiA 245768..247747 (+) 1980 WP_255778436.1 peptide ABC transporter substrate-binding protein Regulator
  DG474_RS01310 (DG474_01320) amiC 247814..249310 (+) 1497 WP_000759894.1 ABC transporter permease Regulator
  DG474_RS01315 (DG474_01325) amiD 249310..250236 (+) 927 WP_000103694.1 oligopeptide ABC transporter permease OppC Regulator
  DG474_RS01320 (DG474_01330) amiE 250245..251312 (+) 1068 WP_255778440.1 ABC transporter ATP-binding protein Regulator
  DG474_RS01325 (DG474_01335) amiF 251323..252252 (+) 930 WP_071851870.1 ATP-binding cassette domain-containing protein Regulator
  DG474_RS01330 (DG474_01340) - 252341..253780 (-) 1440 WP_255778441.1 TrkH family potassium uptake protein -
  DG474_RS01335 (DG474_01345) trkA 253784..255133 (-) 1350 WP_255778442.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34646.70 Da        Isoelectric Point: 9.3349

>NTDB_id=291402 DG474_RS01315 WP_000103694.1 249310..250236(+) (amiD) [Streptococcus oralis strain CCUG 53468]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVIMLGILVAIILMSFIYPMFSNFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRIMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=291402 DG474_RS01315 WP_000103694.1 249310..250236(+) (amiD) [Streptococcus oralis strain CCUG 53468]
ATGTCAACAATCGATAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAACAATTGATGCTCCTGCCTA
TTCATACTGGGGTTCTGTATTTAGACAGTTTCTAAAGAAAAAATCAACAGTCATTATGTTGGGGATTTTGGTTGCCATTA
TCTTGATGAGCTTTATTTATCCAATGTTCTCAAACTTTGACTTTAACGATGTAAGTAAGGTCAATGACTTTAGCGCTCGT
TTTATCAAACCCAATGCTGAACATTGGTTTGGTACAGATAGCAATGGTAAATCCTTGTTTGATGGGGTTTGGTTTGGTGC
GCGTAATTCAATTCTTATCTCTGTAATTGCCACTTTTATCAACCTTGTGATTGGGGTTATTGTTGGTGGGATTTGGGGAA
TTTCAAAATCCGTTGACCGTATCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTCATTGTC
TTGACTTACTCAATTGGTGCTGGTTTCTGGAATTTGATTTTTGCCATGAGTGTGACAACTTGGATTGGGATTGCTTATAT
GATTCGTATCCAAATCATGCGTTACCGTGATTTGGAATACAACCTTGCTTCTCAAACACTTGGAACACCAACCTTTAAAA
TCATCGTTAAAAACATCATGCCGCAATTGGTATCTGTTATTGTTTCTACAATGACCTTGATGTTGCCAAGCTTCATCTCT
TATGAAGCCTTCCTTTCCTTCTTTGGGTTGGGATTGCCTGTAACAGTGCCAAGTTTGGGACGTTTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCTTACTTATTCTGGATTCCGTTGACAACCTTGATCTTGGTATCCCTATCTCTTTTCGTTG
TTGGTCAAAACCTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.766

100

0.838
  amiD Streptococcus thermophilus LMG 18311

82.143

100

0.821
  amiD Streptococcus thermophilus LMD-9

82.143

100

0.821

Multiple sequence alignment