Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   DEH83_RS09610 Genome accession   NZ_CP029207
Coordinates   1902578..1903282 (-) Length   234 a.a.
NCBI ID   WP_255776709.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1897578..1908282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS09595 (DEH83_09630) - 1898118..1899104 (-) 987 WP_255776706.1 Gfo/Idh/MocA family protein -
  DEH83_RS09600 (DEH83_09635) - 1899549..1900286 (-) 738 WP_255776707.1 DUF805 domain-containing protein -
  DEH83_RS09605 (DEH83_09640) comEC/celB 1900366..1902594 (-) 2229 WP_255776708.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DEH83_RS09610 (DEH83_09645) comEA/celA/cilE 1902578..1903282 (-) 705 WP_255776709.1 helix-hairpin-helix domain-containing protein Machinery gene
  DEH83_RS09615 (DEH83_09650) smpB 1903450..1903917 (-) 468 WP_006267184.1 SsrA-binding protein SmpB -
  DEH83_RS09620 (DEH83_09655) rnr 1903880..1906219 (-) 2340 WP_255776710.1 ribonuclease R -
  DEH83_RS09625 (DEH83_09660) secG 1906312..1906545 (-) 234 WP_003024744.1 preprotein translocase subunit SecG -
  DEH83_RS09630 (DEH83_09665) rpmG 1906585..1906734 (-) 150 WP_003024746.1 50S ribosomal protein L33 -
  DEH83_RS09635 (DEH83_09670) - 1906718..1907923 (-) 1206 WP_304674963.1 multidrug efflux MFS transporter -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25279.69 Da        Isoelectric Point: 9.6673

>NTDB_id=291219 DEH83_RS09610 WP_255776709.1 1902578..1903282(-) (comEA/celA/cilE) [Streptococcus constellatus strain TCV107]
MLEAIIAKIKKHKILVGLSLIGLIIAGFFMMTSKSARQSNVGDIAQETTNAKLERKETSTETKKKQQKEETESQKNLASE
ELEFLTVDVKGAVKNPGIYQLKKTSRINDAIQKAGGLTTDADSKSINLAQKLTDEAVIYVAVMGENVTNAASSNGQTLTT
DTNGTAAQKGNKVNLNKANLSDLQSISGIGQKRAQDILDYREANGKFNSVDDLKNISGVGAKTLEKLKEYVTVD

Nucleotide


Download         Length: 705 bp        

>NTDB_id=291219 DEH83_RS09610 WP_255776709.1 1902578..1903282(-) (comEA/celA/cilE) [Streptococcus constellatus strain TCV107]
ATGTTAGAGGCAATCATCGCAAAAATAAAAAAGCATAAAATTTTAGTTGGTTTAAGCCTGATTGGTTTGATCATAGCAGG
ATTTTTTATGATGACTAGTAAATCTGCTAGACAATCTAATGTGGGAGATATTGCACAAGAGACCACAAATGCAAAACTAG
AACGGAAAGAAACTTCAACTGAAACGAAGAAAAAACAACAGAAAGAAGAAACAGAATCTCAAAAGAATTTAGCGAGTGAA
GAATTGGAATTTTTAACTGTAGATGTTAAAGGTGCTGTTAAAAATCCAGGTATTTATCAATTAAAAAAAACAAGCCGAAT
AAATGATGCTATCCAAAAAGCGGGTGGACTAACGACAGACGCTGACAGCAAATCTATCAATTTGGCTCAAAAACTAACAG
ATGAGGCTGTGATTTACGTGGCAGTTATGGGTGAAAATGTAACAAATGCTGCAAGTAGTAATGGACAAACTTTAACGACA
GATACCAATGGAACTGCGGCACAAAAAGGGAATAAGGTCAATCTAAATAAGGCCAATTTGTCTGATTTACAGTCTATTTC
TGGTATTGGACAAAAGCGCGCCCAAGATATTTTAGATTATCGTGAGGCAAATGGAAAATTTAATTCTGTTGATGATCTTA
AAAATATATCAGGAGTTGGTGCTAAAACATTAGAGAAATTGAAAGAATATGTCACAGTGGATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(169-232)

SLBB domain (SLBB)

(87-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

50.215

99.573

0.5
  comEA/celA/cilE Streptococcus mitis SK321

49.367

100

0.5
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

49.785

99.573

0.496
  comEA/celA/cilE Streptococcus pneumoniae R6

49.356

99.573

0.491
  comEA/celA/cilE Streptococcus pneumoniae Rx1

49.356

99.573

0.491
  comEA/celA/cilE Streptococcus pneumoniae D39

49.356

99.573

0.491
  comEA Streptococcus thermophilus LMD-9

42.553

100

0.427
  comEA Lactococcus lactis subsp. cremoris KW2

38.627

99.573

0.385

Multiple sequence alignment