Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   DEH83_RS09180 Genome accession   NZ_CP029207
Coordinates   1811279..1812121 (+) Length   280 a.a.
NCBI ID   WP_255776666.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1806279..1817121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS09150 (DEH83_09180) - 1806588..1807700 (+) 1113 WP_037597004.1 acyl-CoA dehydrogenase family protein -
  DEH83_RS09155 (DEH83_09185) - 1807704..1808621 (+) 918 WP_003069057.1 MBL fold metallo-hydrolase -
  DEH83_RS09160 (DEH83_09190) ylqF 1808741..1809592 (+) 852 WP_255776664.1 ribosome biogenesis GTPase YlqF -
  DEH83_RS09165 (DEH83_09195) - 1809579..1810361 (+) 783 WP_006267744.1 ribonuclease HII -
  DEH83_RS09170 (DEH83_09200) - 1810358..1810571 (+) 214 Protein_1762 CAT RNA binding domain-containing protein -
  DEH83_RS09175 (DEH83_09205) - 1810637..1811194 (+) 558 WP_255776665.1 sugar O-acetyltransferase -
  DEH83_RS09180 (DEH83_09210) dprA/cilB/dalA 1811279..1812121 (+) 843 WP_255776666.1 DNA-processing protein DprA Machinery gene
  DEH83_RS09185 (DEH83_09215) topA 1812207..1814300 (+) 2094 WP_255776667.1 type I DNA topoisomerase -
  DEH83_RS09190 (DEH83_09220) - 1814362..1814859 (+) 498 WP_255776668.1 phosphoribosylanthranilate isomerase -
  DEH83_RS09195 (DEH83_09225) trmFO 1815034..1816368 (+) 1335 WP_255776669.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31201.87 Da        Isoelectric Point: 5.4273

>NTDB_id=291217 DEH83_RS09180 WP_255776666.1 1811279..1812121(+) (dprA/cilB/dalA) [Streptococcus constellatus strain TCV107]
MDNFDIYKLKTAGLTNQQVINVLEYAEIREKELLVKDMAVVSECRNPALFIEKYLQLDDDLLRQEFEKFPSFSILEDVYP
WDLSEIYNPPVLLFYKGNLDLLKLPKVAVVGSRNSSRVGSQSVQKIIKELNNELVIVSGLARGIDTSAHMAALQNGGRTI
AVIGTGLDVFYPRANKKLQSYLGEHHLVLSEYGPEAEPLKFHFPERNRIIAGLCRGVIVAEAKMRSGSLITCERAMEEGR
DVFAIPGSILDGRSDGCHHLIQEGAKCIASGADVLSEFQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=291217 DEH83_RS09180 WP_255776666.1 1811279..1812121(+) (dprA/cilB/dalA) [Streptococcus constellatus strain TCV107]
ATGGATAATTTTGATATTTATAAACTAAAAACAGCTGGTTTGACCAATCAACAAGTCATCAATGTATTGGAATACGCAGA
AATTCGCGAAAAAGAATTGTTAGTCAAAGATATGGCAGTTGTCTCCGAATGTCGTAATCCTGCTCTTTTTATTGAAAAAT
ATTTACAATTAGATGATGATTTATTACGTCAAGAATTTGAGAAATTCCCATCTTTTTCTATCTTGGAAGATGTATATCCC
TGGGATTTGAGTGAAATTTATAATCCACCCGTTCTTCTTTTTTATAAAGGTAATTTGGATTTGCTAAAATTACCTAAAGT
AGCTGTTGTAGGAAGTCGGAATAGTAGCCGAGTAGGCAGTCAATCCGTTCAAAAGATTATTAAAGAGCTAAACAATGAAT
TGGTTATCGTGAGTGGTTTAGCACGCGGAATTGATACCTCAGCTCACATGGCAGCATTGCAAAATGGTGGTCGAACAATT
GCAGTTATCGGAACGGGTCTAGACGTTTTTTATCCAAGGGCGAATAAAAAACTCCAATCGTATTTGGGAGAACATCATCT
AGTACTTAGTGAATATGGTCCTGAAGCAGAGCCATTAAAATTTCATTTTCCAGAGCGTAATCGGATTATAGCAGGATTGT
GTAGAGGGGTTATTGTTGCCGAAGCAAAAATGCGCTCAGGCAGCCTTATTACTTGTGAGCGAGCAATGGAAGAAGGGCGA
GATGTATTTGCTATTCCAGGGTCAATTTTAGATGGAAGAAGTGATGGCTGTCATCATTTGATTCAGGAAGGAGCAAAATG
CATCGCATCAGGGGCTGACGTACTTTCTGAATTCCAATTTTAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-60)

DNA recombination-mediator protein A (DNA_processg_A)

(74-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

76.786

100

0.768
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

76.429

100

0.764
  dprA/cilB/dalA Streptococcus pneumoniae D39

76.429

100

0.764
  dprA/cilB/dalA Streptococcus pneumoniae R6

76.429

100

0.764
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

76.429

100

0.764
  dprA/cilB/dalA Streptococcus mitis SK321

76.071

100

0.761
  dprA Streptococcus mutans UA159

64.643

100

0.646
  dprA Lactococcus lactis subsp. cremoris KW2

56.429

100

0.564
  dprA Staphylococcus aureus N315

37.234

100

0.375
  dprA Legionella pneumophila strain ERS1305867

43.154

86.071

0.371
  dprA Bacillus subtilis subsp. subtilis str. 168

48.095

75

0.361

Multiple sequence alignment