Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   DEH83_RS08120 Genome accession   NZ_CP029207
Coordinates   1598506..1599207 (+) Length   233 a.a.
NCBI ID   WP_003035055.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1593506..1604207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS08100 (DEH83_08135) ccpA 1594437..1595441 (+) 1005 WP_037596820.1 catabolite control protein A Regulator
  DEH83_RS08105 (DEH83_08140) - 1595533..1596531 (+) 999 WP_003068685.1 glycosyltransferase family 4 protein -
  DEH83_RS08110 (DEH83_08145) - 1596533..1597846 (+) 1314 WP_006268747.1 glycosyltransferase family 4 protein -
  DEH83_RS08115 (DEH83_08150) - 1597873..1598205 (+) 333 WP_006268722.1 hypothetical protein -
  DEH83_RS08120 (DEH83_08155) micA 1598506..1599207 (+) 702 WP_003035055.1 response regulator YycF Regulator
  DEH83_RS08125 (DEH83_08160) micB 1599200..1600552 (+) 1353 WP_037596825.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DEH83_RS08130 (DEH83_08165) vicX 1600554..1601357 (+) 804 WP_255776559.1 MBL fold metallo-hydrolase Regulator
  DEH83_RS08135 (DEH83_08170) - 1601391..1601704 (+) 314 Protein_1559 DUF454 family protein -
  DEH83_RS08140 (DEH83_08175) rnc 1601840..1602538 (+) 699 WP_003068697.1 ribonuclease III -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26868.85 Da        Isoelectric Point: 4.7415

>NTDB_id=291211 DEH83_RS08120 WP_003035055.1 1598506..1599207(+) (micA) [Streptococcus constellatus strain TCV107]
MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFNGREALEMFEAERPDILILDLMLPELDGLEVARTIRKTSNVPIIVLSA
KDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRRTDLTIENQEAEAAPTEIVIGDLQILTDAFVVKKHGEELDLTH
REFELLHHLATHIGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDIPSRPEYILTRRGVGYYMRNND

Nucleotide


Download         Length: 702 bp        

>NTDB_id=291211 DEH83_RS08120 WP_003035055.1 1598506..1599207(+) (micA) [Streptococcus constellatus strain TCV107]
ATGAAAAAAATATTAGTTGTAGATGATGAGAAACCAATCTCAGATATTATAAAATTTAACATGGTAAAAGAAGGTTATGA
AGTAGTGACAGCCTTCAATGGTCGTGAAGCATTAGAGATGTTTGAAGCAGAACGTCCAGATATTTTGATTTTGGACTTGA
TGTTGCCTGAACTGGACGGCTTAGAGGTGGCGCGAACGATTCGGAAAACGAGCAATGTTCCCATCATCGTTCTTTCTGCC
AAAGACAGTGAATTTGATAAAGTCATTGGTCTCGAAATCGGAGCAGATGACTATATGACAAAGCCGTTTTCTAATCGTGA
GTTACAGGCGCGTGTCAAAGCTATTTTGCGTCGCACAGATTTGACAATTGAAAATCAAGAAGCAGAAGCTGCTCCGACAG
AAATTGTGATTGGAGATTTGCAGATTTTGACCGATGCTTTTGTCGTGAAAAAGCATGGTGAAGAATTGGATTTAACACAC
CGTGAGTTTGAATTGCTACACCATTTGGCCACGCATATCGGGCAAGTAATGACGCGTGAACATCTACTAGAAACGGTGTG
GGGATATGATTATTTTGGAGATGTTCGGACTGTTGATGTGACAATTCGCCGCTTGAGAGAGAAGATTGAGGATATTCCTA
GCCGACCAGAGTATATTTTAACACGGCGCGGTGTTGGATATTATATGAGAAACAATGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-228)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

83.262

100

0.833
  vicR Streptococcus mutans UA159

79.237

100

0.803
  covR Lactococcus lactis subsp. lactis strain DGCC12653

45.415

98.283

0.446
  covR Streptococcus salivarius strain HSISS4

45.217

98.712

0.446
  scnR Streptococcus mutans UA159

36.052

100

0.361

Multiple sequence alignment