Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DEH83_RS06310 Genome accession   NZ_CP029207
Coordinates   1245964..1247943 (+) Length   659 a.a.
NCBI ID   WP_020998025.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1240964..1252943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS06295 (DEH83_06300) - 1241170..1242780 (+) 1611 WP_255776418.1 CTP synthase -
  DEH83_RS06300 (DEH83_06305) - 1242943..1243632 (+) 690 WP_255776419.1 B3/4 domain-containing protein -
  DEH83_RS06305 (DEH83_06310) amiA3 1243792..1245768 (+) 1977 WP_003070579.1 peptide ABC transporter substrate-binding protein Regulator
  DEH83_RS06310 (DEH83_06315) amiA3 1245964..1247943 (+) 1980 WP_020998025.1 peptide ABC transporter substrate-binding protein Regulator
  DEH83_RS06315 (DEH83_06320) amiC 1248307..1249803 (+) 1497 WP_003070574.1 ABC transporter permease Regulator
  DEH83_RS06320 (DEH83_06325) amiD 1249803..1250729 (+) 927 WP_003070571.1 oligopeptide ABC transporter permease OppC Regulator
  DEH83_RS06325 (DEH83_06330) amiE 1250738..1251805 (+) 1068 WP_006268109.1 ABC transporter ATP-binding protein Regulator
  DEH83_RS06330 (DEH83_06335) amiF 1251816..1252739 (+) 924 WP_003070566.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73306.97 Da        Isoelectric Point: 7.8912

>NTDB_id=291198 DEH83_RS06310 WP_020998025.1 1245964..1247943(+) (amiA3) [Streptococcus constellatus strain TCV107]
MKKSKIIALAAVTLLTAGALTACSGSKTSSSNKTFSYVYEQDPDNLDYLTTGKASTSNITSNVIDGLLENDRYGNLIPSV
AKDWTVSKDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADKKSDAIYLVQDSIKGLDAYMKGENKDFSSVGI
KAVDDYTVQYTLNRPESFWNSKTTMGVLAPVNAEFLKSKGNKFAQATDPSSLLYNGPYLLKSITAKSSVELAKNPNYWDK
KNVHIDNIKLSYYDGQDQDKLAKGFSDGSFTNAKVFPTSPSYASVSKKYKNNIVYTPQDATTYLVATNIDRQSYNHTSKT
TDAQKTSTKKALLNKDFRQAITFAFDRTAYASQVNGKDGATKMLRNLFVPPTFVQTDDKNFGELVKEKLVSYDESWKDVN
LNDAQDGLYNPTKAKEKLAKAKAALQADGVQFPIHIDMPVDQTATNKVQRVQSLKQSIEKNLGKENVVIDIQQMSKDDVN
NITYFAESAAAEDWDLSDNVGWSPDFQDPSTYLDIIKPSSGESTKTYLGFDAGTNNAAAAQVGMNEYEKLLNEAEKETTN
TNARYEKYAAAQAWLTDNALVIPTTTLTGRPILSRTVPFTNPFAWSGNKGNSEIILYKYLELQDEPVTQDQYKKAMTKWN
KERSKSNKKAQEELADHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=291198 DEH83_RS06310 WP_020998025.1 1245964..1247943(+) (amiA3) [Streptococcus constellatus strain TCV107]
ATGAAGAAAAGTAAAATCATTGCTTTAGCGGCTGTTACCCTACTTACAGCAGGAGCCTTAACGGCTTGTTCTGGCTCTAA
AACAAGTTCTAGCAACAAAACATTTTCATATGTTTATGAGCAAGATCCAGATAATTTGGATTATTTGACAACTGGGAAGG
CTTCTACTTCAAATATTACAAGTAATGTCATTGATGGACTCTTAGAAAATGACCGTTACGGAAATTTAATCCCTTCTGTG
GCAAAGGATTGGACGGTTTCCAAAGATGGCTTGACTTACACTTATAAACTTCGTAAAGGTGTCAAATGGTATACATCCGA
AGGTGAAGAGTATGCCGAAGTCAAAGCGCAAGACTTTGTGACTGGTTTGAAACACGCTGCAGATAAGAAATCCGATGCTA
TTTATTTGGTACAAGATTCAATCAAAGGCCTGGATGCTTACATGAAGGGTGAAAATAAAGATTTCTCTTCTGTCGGTATC
AAAGCGGTTGATGATTATACGGTTCAATATACTCTGAATCGACCAGAAAGCTTTTGGAATTCAAAGACTACGATGGGGGT
TTTAGCGCCAGTTAATGCAGAATTTTTGAAATCAAAAGGAAATAAATTTGCACAAGCAACAGACCCATCTAGTCTTCTTT
ATAATGGACCATACTTGCTAAAATCTATCACTGCAAAATCATCTGTTGAATTGGCTAAAAATCCAAACTATTGGGATAAG
AAAAATGTACACATTGATAACATCAAATTGTCTTACTATGATGGTCAAGACCAAGATAAACTTGCTAAAGGATTTAGTGA
CGGTTCATTTACCAATGCAAAAGTATTTCCAACTAGTCCAAGTTATGCTTCCGTCAGCAAGAAATACAAAAACAACATCG
TTTATACTCCACAAGATGCAACCACTTATCTAGTGGCTACAAACATCGATCGTCAATCTTACAATCATACATCAAAGACA
ACGGATGCTCAAAAGACATCTACTAAGAAAGCATTATTGAATAAAGATTTCCGTCAAGCAATTACCTTTGCATTTGACCG
TACTGCTTATGCTTCACAGGTGAATGGTAAAGATGGTGCGACAAAGATGCTTCGTAATCTCTTTGTACCACCAACTTTTG
TTCAAACAGATGATAAGAACTTTGGAGAATTGGTCAAAGAAAAATTAGTCAGCTACGATGAAAGTTGGAAAGATGTCAAC
TTAAATGATGCGCAAGACGGTCTTTACAATCCAACGAAAGCCAAGGAAAAATTAGCCAAAGCGAAAGCAGCGCTTCAAGC
AGACGGTGTTCAATTCCCAATCCACATTGACATGCCAGTTGACCAAACGGCAACGAATAAAGTTCAACGTGTACAATCAT
TGAAACAATCGATTGAAAAAAATCTTGGCAAAGAAAATGTTGTGATTGACATTCAACAAATGTCTAAAGACGATGTAAAT
AATATCACTTACTTTGCTGAATCTGCAGCTGCAGAAGATTGGGATCTTTCTGATAATGTTGGTTGGAGTCCAGACTTCCA
AGATCCATCTACCTATCTTGATATCATCAAACCTTCAAGCGGTGAAAGCACAAAGACCTATCTAGGATTTGATGCAGGTA
CGAATAACGCTGCAGCAGCACAAGTCGGTATGAACGAATATGAAAAGCTGTTGAACGAGGCTGAAAAAGAAACCACTAAT
ACGAATGCACGCTATGAAAAATATGCGGCAGCCCAAGCTTGGTTGACTGATAATGCATTAGTTATTCCAACAACAACGCT
AACGGGTCGCCCAATTCTTTCTCGCACAGTGCCATTTACTAATCCATTTGCTTGGTCAGGAAACAAAGGGAATAGTGAAA
TCATTCTATATAAATATCTTGAACTCCAAGATGAGCCTGTTACACAAGATCAGTACAAGAAAGCTATGACTAAATGGAAT
AAAGAGCGATCAAAATCTAATAAAAAAGCTCAAGAAGAACTTGCAGATCATGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

61.818

100

0.619
  amiA Streptococcus salivarius strain HSISS4

61.515

100

0.616
  amiA3 Streptococcus thermophilus LMG 18311

61.212

100

0.613

Multiple sequence alignment