Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DEH83_RS06320 Genome accession   NZ_CP029207
Coordinates   1249803..1250729 (+) Length   308 a.a.
NCBI ID   WP_003070571.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1244803..1255729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS06310 (DEH83_06315) amiA3 1245964..1247943 (+) 1980 WP_020998025.1 peptide ABC transporter substrate-binding protein Regulator
  DEH83_RS06315 (DEH83_06320) amiC 1248307..1249803 (+) 1497 WP_003070574.1 ABC transporter permease Regulator
  DEH83_RS06320 (DEH83_06325) amiD 1249803..1250729 (+) 927 WP_003070571.1 oligopeptide ABC transporter permease OppC Regulator
  DEH83_RS06325 (DEH83_06330) amiE 1250738..1251805 (+) 1068 WP_006268109.1 ABC transporter ATP-binding protein Regulator
  DEH83_RS06330 (DEH83_06335) amiF 1251816..1252739 (+) 924 WP_003070566.1 ATP-binding cassette domain-containing protein Regulator
  DEH83_RS06335 (DEH83_06340) - 1252924..1253760 (+) 837 WP_255776420.1 Cof-type HAD-IIB family hydrolase -
  DEH83_RS06340 (DEH83_06345) - 1253817..1254782 (-) 966 WP_247948155.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34523.57 Da        Isoelectric Point: 9.8589

>NTDB_id=291200 DEH83_RS06320 WP_003070571.1 1249803..1250729(+) (amiD) [Streptococcus constellatus strain TCV107]
MATIDKSKFTFVKRDDFASEIIDAPAYSYWKSVMRQFLRKKSTIAMLGILVAIVLMSFIYPIFSNFDFNDVSKVNDFSAR
YIKPNSQYWFGTDSNGKSLFDGVWFGARNSILISVIATMINLVIGIVIGGIWGISKTVDRVMIEIYNIISNIPPLLIVIV
LTYSIGAGFWNLIFAMTITGWIGIAYNIRIQILRYRDLEYNLASRTLGTPTVKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=291200 DEH83_RS06320 WP_003070571.1 1249803..1250729(+) (amiD) [Streptococcus constellatus strain TCV107]
ATGGCTACAATTGATAAAAGTAAGTTCACATTTGTAAAACGCGATGATTTTGCCTCTGAAATAATTGATGCGCCAGCTTA
TTCTTACTGGAAATCTGTTATGCGTCAATTCTTAAGGAAAAAATCAACAATTGCTATGTTGGGTATTCTTGTTGCAATTG
TTTTGATGAGTTTCATCTATCCGATTTTTTCAAATTTCGATTTTAATGATGTAAGTAAAGTAAATGATTTTAGTGCTCGT
TATATCAAACCGAATTCCCAATATTGGTTTGGTACAGATAGTAACGGAAAATCCCTCTTTGACGGAGTGTGGTTTGGAGC
ACGTAACTCTATTCTTATTTCAGTTATTGCAACCATGATTAACCTTGTGATTGGTATTGTTATTGGTGGTATCTGGGGAA
TTTCAAAGACTGTCGATCGTGTGATGATTGAGATTTATAATATCATTTCTAACATTCCACCGCTTTTGATTGTCATTGTC
TTGACTTACTCAATCGGTGCAGGTTTCTGGAATTTGATTTTTGCTATGACCATCACTGGTTGGATTGGGATTGCTTACAA
TATTCGTATCCAAATTCTACGTTATCGTGATTTAGAGTATAACCTTGCCAGTCGCACTTTGGGAACACCGACTGTTAAAA
TCATTGTAAAAAATATTATGCCACAGTTGGTTTCTGTGATTGTGACAACTGCTTCACAATTACTTCCAAGTTTCATTTCA
TACGAAGCCTTTCTGTCTTTCTTTGGTTTGGGACTTCCTGTGACGGTGCCAAGTTTAGGGCGTTTGATTTCGGATTATTC
ACAAAACGTTACAACAAATGCATATCTTTTCTGGATTCCATTAACAACGTTGATTTTGGTTTCCCTTTCCCTATTCGTTG
TCGGTCAGAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

85.714

100

0.857
  amiD Streptococcus thermophilus LMG 18311

83.117

100

0.831
  amiD Streptococcus thermophilus LMD-9

83.117

100

0.831

Multiple sequence alignment