Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   DEH83_RS06315 Genome accession   NZ_CP029207
Coordinates   1248307..1249803 (+) Length   498 a.a.
NCBI ID   WP_003070574.1    Uniprot ID   A0AAW7NWL0
Organism   Streptococcus constellatus strain TCV107     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1243307..1254803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS06305 (DEH83_06310) amiA3 1243792..1245768 (+) 1977 WP_003070579.1 peptide ABC transporter substrate-binding protein Regulator
  DEH83_RS06310 (DEH83_06315) amiA3 1245964..1247943 (+) 1980 WP_020998025.1 peptide ABC transporter substrate-binding protein Regulator
  DEH83_RS06315 (DEH83_06320) amiC 1248307..1249803 (+) 1497 WP_003070574.1 ABC transporter permease Regulator
  DEH83_RS06320 (DEH83_06325) amiD 1249803..1250729 (+) 927 WP_003070571.1 oligopeptide ABC transporter permease OppC Regulator
  DEH83_RS06325 (DEH83_06330) amiE 1250738..1251805 (+) 1068 WP_006268109.1 ABC transporter ATP-binding protein Regulator
  DEH83_RS06330 (DEH83_06335) amiF 1251816..1252739 (+) 924 WP_003070566.1 ATP-binding cassette domain-containing protein Regulator
  DEH83_RS06335 (DEH83_06340) - 1252924..1253760 (+) 837 WP_255776420.1 Cof-type HAD-IIB family hydrolase -
  DEH83_RS06340 (DEH83_06345) - 1253817..1254782 (-) 966 WP_247948155.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55887.12 Da        Isoelectric Point: 10.0448

>NTDB_id=291199 DEH83_RS06315 WP_003070574.1 1248307..1249803(+) (amiC) [Streptococcus constellatus strain TCV107]
MKKYIFMRILRSLVSIFMVTTLTYTIIYTMVPRKLIFKQDPNYNKIATTPDKKTNYENTIFERMGYIDYYDTKELQEKAS
KENPSVTVEPTNANKKIYEAYIKKLGRGWKLQQFKESKQFYATREVPVYERVLGFYGNLIQIDHTGAVKDASNPNLKRYL
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFIHQNFVRLNLGISYPTYANLPVLQVISQGQGQTKTSEVQFPTGKKTSSV
NIYTRTYKSPKQADARDVANYGKDDPYTATESNYQYPSMIVSSSIVGLIGLALSYLIAVPLGSYMARFKNTLFDSISTGA
LTFLMSLPTIALVYIIRLIGSALGLPDSFPILGAGDWRSYVLPAVILGLLSAPWTAVWIRRYMIDLQSQDFVRFARAKGL
SEQEISNKHIFKNAMVPLVSSIPGAIIGVITGATLTETIFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCLSIFALLLGD
ILMTMLDPRIKLTSKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=291199 DEH83_RS06315 WP_003070574.1 1248307..1249803(+) (amiC) [Streptococcus constellatus strain TCV107]
ATGAAGAAATATATTTTTATGCGTATCTTACGCTCTTTAGTATCTATTTTCATGGTAACAACATTGACTTACACCATTAT
CTATACTATGGTGCCAAGAAAGTTGATTTTCAAGCAGGATCCAAACTATAATAAAATAGCTACAACTCCTGATAAAAAGA
CTAATTATGAAAATACAATTTTTGAGCGTATGGGTTACATTGACTACTATGATACGAAGGAATTACAAGAAAAAGCTAGT
AAAGAGAATCCTTCTGTAACAGTAGAACCTACTAATGCAAATAAAAAAATCTATGAAGCTTACATCAAAAAGTTGGGGCG
TGGTTGGAAATTGCAGCAATTCAAAGAAAGTAAGCAATTTTATGCAACTCGAGAGGTTCCAGTTTATGAACGCGTTCTTG
GTTTCTATGGCAATTTGATTCAAATTGACCATACAGGTGCTGTGAAAGATGCTTCTAATCCAAACTTGAAGCGTTATCTT
CGTATTGAAAATGATCCTGCTATTGGTTGGTCTGTTGTTGGTTCTGGAACGAAACATAAATACTTGTTATATTTCAACAG
TCAATTTCCATTTATCCATCAAAATTTTGTGAGATTAAATCTAGGTATTTCTTATCCAACTTATGCGAATCTTCCTGTTT
TACAAGTTATTTCGCAAGGGCAAGGACAAACGAAAACTTCTGAAGTTCAATTCCCGACAGGTAAGAAAACTTCGTCTGTC
AACATTTATACAAGAACTTATAAATCTCCAAAACAAGCCGATGCGCGTGATGTTGCCAATTATGGAAAAGATGATCCATA
TACGGCAACAGAAAGTAACTACCAATATCCATCAATGATTGTAAGTTCTTCAATTGTTGGTTTGATTGGTCTGGCTTTAT
CTTACTTAATTGCTGTTCCGCTTGGATCTTACATGGCTCGCTTTAAGAATACATTGTTTGATAGTATTTCGACAGGAGCC
TTGACATTCTTGATGTCATTGCCAACTATCGCTTTGGTTTATATCATTCGGTTGATTGGTTCGGCTCTTGGATTGCCGGA
TTCCTTCCCTATTTTGGGAGCAGGAGATTGGCGTTCCTATGTTCTTCCGGCAGTTATTCTTGGGCTTTTGAGTGCGCCTT
GGACAGCTGTTTGGATTCGTCGTTATATGATTGACCTGCAATCACAAGACTTTGTTCGTTTTGCACGGGCAAAAGGTCTC
TCTGAACAAGAAATTTCAAATAAACATATTTTTAAAAACGCCATGGTACCACTTGTATCCAGTATACCTGGTGCTATTAT
CGGAGTTATCACAGGTGCGACTTTGACCGAAACAATCTTTGCTTTCCCTGGAATGGGTAAAATGCTGATTGACTCTGTTA
AAGCATCTAATAATTCTATGGTCGTTGGTCTTGTATTTATCTTTACATGTCTTTCTATTTTCGCTCTTCTATTGGGTGAT
ATTCTGATGACCATGCTTGACCCACGTATTAAATTAACATCAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

80.321

100

0.803
  amiC Streptococcus thermophilus LMG 18311

79.719

100

0.797
  amiC Streptococcus thermophilus LMD-9

79.518

100

0.795

Multiple sequence alignment