Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   DEH83_RS06330 Genome accession   NZ_CP029207
Coordinates   1251816..1252739 (+) Length   307 a.a.
NCBI ID   WP_003070566.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1246816..1257739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS06315 (DEH83_06320) amiC 1248307..1249803 (+) 1497 WP_003070574.1 ABC transporter permease Regulator
  DEH83_RS06320 (DEH83_06325) amiD 1249803..1250729 (+) 927 WP_003070571.1 oligopeptide ABC transporter permease OppC Regulator
  DEH83_RS06325 (DEH83_06330) amiE 1250738..1251805 (+) 1068 WP_006268109.1 ABC transporter ATP-binding protein Regulator
  DEH83_RS06330 (DEH83_06335) amiF 1251816..1252739 (+) 924 WP_003070566.1 ATP-binding cassette domain-containing protein Regulator
  DEH83_RS06335 (DEH83_06340) - 1252924..1253760 (+) 837 WP_255776420.1 Cof-type HAD-IIB family hydrolase -
  DEH83_RS06340 (DEH83_06345) - 1253817..1254782 (-) 966 WP_247948155.1 LacI family DNA-binding transcriptional regulator -
  DEH83_RS06345 (DEH83_06350) - 1254763..1256217 (-) 1455 WP_255776421.1 sucrose-6-phosphate hydrolase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34778.95 Da        Isoelectric Point: 6.3204

>NTDB_id=291202 DEH83_RS06330 WP_003070566.1 1251816..1252739(+) (amiF) [Streptococcus constellatus strain TCV107]
MPEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSKGDIFFDGKRINGKKSKE
EESEVIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERQKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKDLGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDAAQHDYSVDKPEMVEIRPGHFVWANKAEVEKYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=291202 DEH83_RS06330 WP_003070566.1 1251816..1252739(+) (amiF) [Streptococcus constellatus strain TCV107]
ATGCCTGAAAAATTAGTAGAAGTTAAAGATTTGGAAATTTCCTTCGGTGAAGGAAGCAAGAAATTTGTTGCTGTAAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCACTTGTAGGAGAATCCGGCTCTGGTAAGACAACAATCGGTCGTG
CCATTATTGGTTTGAACGATACTAGCAAGGGAGATATCTTCTTTGATGGAAAGAGAATCAATGGTAAGAAATCAAAAGAG
GAAGAATCAGAAGTGATTCGCAAGATTCAAATGATTTTCCAAGACCCTGCTGCTAGTTTGAATGAACGTGCGACAGTTGA
TTATATTATTTCAGAGGGTCTGTATAATTTCCATCTGTTTAAAGATGAAGAAGAACGTCAGAAAAAGGTGAAAGATATTA
TTCATGAGGTAGGGTTGTTATCAGAGCATTTGACCCGCTATCCGCATGAATTTTCTGGTGGTCAGCGTCAACGGATTGGG
ATTGCTCGTGCGCTTGTTATGGAGCCAGATTTTGTGATTGCAGATGAGCCGATTTCAGCACTTGACGTCTCTGTGCGCGC
ACAAGTTTTAAATCTTCTTAAGAAATTCCAAAAAGATCTGGGCTTGACCTATCTTTTCATTGCCCATGATTTATCAGTTG
TACGTTTTATCTCAGACCGTATTGCTGTTATTTATAAGGGTGTGATTGTAGAGGTGGCTGAAACAGAAGAACTCTTCAAT
AATCCAATCCATCCTTATACGCAGTCATTGCTATCTGCTGTCCCAATTCCAGACCCAATATTGGAGCGGAAGAAAGTATT
GAAGGTTTATGATGCTGCTCAACATGATTATTCAGTAGATAAGCCAGAAATGGTTGAAATTCGTCCAGGACACTTTGTCT
GGGCTAATAAAGCAGAAGTTGAAAAGTATAAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

87.255

99.674

0.87
  amiF Streptococcus salivarius strain HSISS4

87.255

99.674

0.87
  amiF Streptococcus thermophilus LMD-9

86.928

99.674

0.866

Multiple sequence alignment