Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   DEH83_RS01830 Genome accession   NZ_CP029207
Coordinates   371288..371878 (-) Length   196 a.a.
NCBI ID   WP_003073523.1    Uniprot ID   A0A428EQY4
Organism   Streptococcus constellatus strain TCV107     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 366288..376878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS01805 (DEH83_01780) - 366713..367477 (-) 765 WP_003070045.1 ABC transporter ATP-binding protein -
  DEH83_RS01810 (DEH83_01785) - 367477..368427 (-) 951 WP_255776919.1 branched-chain amino acid ABC transporter permease -
  DEH83_RS01815 (DEH83_01790) - 368431..369300 (-) 870 WP_255776920.1 branched-chain amino acid ABC transporter permease -
  DEH83_RS01820 (DEH83_01795) - 369683..370845 (-) 1163 Protein_361 ABC transporter substrate-binding protein -
  DEH83_RS01825 (DEH83_01800) - 370928..371197 (-) 270 WP_003073520.1 DUF2129 domain-containing protein -
  DEH83_RS01830 (DEH83_01805) clpP 371288..371878 (-) 591 WP_003073523.1 ATP-dependent Clp protease proteolytic subunit Regulator
  DEH83_RS01835 (DEH83_01810) upp 371991..372620 (-) 630 WP_003025639.1 uracil phosphoribosyltransferase -
  DEH83_RS01840 (DEH83_01815) mgtA 372718..375372 (-) 2655 WP_255776921.1 magnesium-translocating P-type ATPase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21489.56 Da        Isoelectric Point: 4.8097

>NTDB_id=291158 DEH83_RS01830 WP_003073523.1 371288..371878(-) (clpP) [Streptococcus constellatus strain TCV107]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGAVEDNMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEKILADNSGK
TVKQVHKDAERDYWMSAQETLDYGFIDEIMANNNLN

Nucleotide


Download         Length: 591 bp        

>NTDB_id=291158 DEH83_RS01830 WP_003073523.1 371288..371878(-) (clpP) [Streptococcus constellatus strain TCV107]
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGGGAACGCTCGTACGATATTTACTCACGCCTTTTAAAAGATCGTAT
TATTATGCTCACTGGAGCGGTTGAAGATAACATGGCCAATTCCATTATTGCCCAACTGCTTTTCCTAGATGCTCAAGATA
GTACAAAGGATATTTATCTTTATATCAATACGCCAGGAGGTTCTGTATCGGCGGGTCTAGCGATTGTCGATACAATGAAC
TTCATCAAATCAGATGTTCAAACAATTGTCATGGGAATGGCTGCGTCCATGGGAACAATCATTGCTTCAAGTGGTGCTAA
AGGCAAACGCTTTATGTTGCCAAATGCAGAGTACATGATTCATCAACCAATGGGTGGAACTGGTGGCGGTACGCAACAAA
CCGATATGGCGATTGCTGCTGAACATTTGCTGAAAACTCGAAACAATTTGGAAAAAATTCTTGCAGATAACTCTGGTAAG
ACCGTTAAGCAAGTTCATAAAGATGCTGAACGTGACTACTGGATGAGTGCTCAAGAAACACTAGATTATGGTTTCATTGA
TGAAATCATGGCAAATAACAACTTGAACTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A428EQY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

91.837

100

0.918
  clpP Streptococcus pneumoniae R6

91.837

100

0.918
  clpP Streptococcus pneumoniae TIGR4

91.837

100

0.918
  clpP Streptococcus pneumoniae D39

91.837

100

0.918
  clpP Streptococcus thermophilus LMG 18311

91.795

99.49

0.913
  clpP Streptococcus thermophilus LMD-9

91.795

99.49

0.913
  clpP Streptococcus pyogenes MGAS315

91.282

99.49

0.908
  clpP Streptococcus pyogenes JRS4

91.282

99.49

0.908
  clpP Streptococcus mutans UA159

91.282

99.49

0.908
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

85.128

99.49

0.847
  clpP Lactococcus lactis subsp. cremoris KW2

84.615

99.49

0.842
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.549

98.469

0.577
  clpP Bacillus subtilis subsp. subtilis str. 168

57.812

97.959

0.566

Multiple sequence alignment