Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SGO_RS08395 Genome accession   NC_009785
Coordinates   1775577..1777568 (-) Length   663 a.a.
NCBI ID   WP_012130757.1    Uniprot ID   P31306
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1770577..1782568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS08375 (SGO_1708) amiF 1771080..1772003 (-) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  SGO_RS08380 (SGO_1709) amiE 1772014..1773081 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  SGO_RS08385 (SGO_1710) amiD 1773090..1774016 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  SGO_RS08390 (SGO_1711) amiC 1774016..1775512 (-) 1497 WP_008809624.1 ABC transporter permease Regulator
  SGO_RS08395 (SGO_1712) amiA 1775577..1777568 (-) 1992 WP_012130757.1 peptide ABC transporter substrate-binding protein Regulator
  SGO_RS08400 (SGO_1713) amiA 1777848..1779830 (-) 1983 WP_012130758.1 peptide ABC transporter substrate-binding protein Regulator
  SGO_RS08405 (SGO_1715) amiA 1780081..1782039 (-) 1959 WP_012130760.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 73370.79 Da        Isoelectric Point: 5.0247

>NTDB_id=29089 SGO_RS08395 WP_012130757.1 1775577..1777568(-) (amiA) [Streptococcus gordonii str. Challis substr. CH1]
MKKGKILALAGVALLATGVLAACSNSTSNSSNSSSSGADQVFNYIYEVDPENLNYLISSKAATTDLTANLIDGLLENDNY
GNLVPSMAEDWTVSKDGLTYTYTLRKDAKWYTSDGEEYADVKAQDFVAGLKYAADNKSETLYLVQSSIKGLDDYVNGKTK
DFSSVGVKAVDDHTVQYTLNEPESFWNSKTTMGILYPVNEEFLKSKGDKFAQSADPTSLLYNGPFLLKSITSKSSIEFAK
NPNYWDKDNVHVSDVKLTYFDGQDQGKPAEQFAKGALSAARLAPTSATFSKVEKEFKDNIVYTPQDSTSYLVGVNIDRQA
YNHTAKSSDAQKSSTKKALMNKDFRQALSFAFDRTAYASQVNGKEGATKMLRNLYIPPTFVQADGKSFGELVKEKVASYG
DEWKDVNFDDAQDGLYNKEKAKAEFAKAKKALQEEGVEFPIHLDMPVDQTATAKVQRVQSLKQSIESSLGTDNVVVDIHQ
MKTDDVLNITYYAASAAEEDWDISDNVGWSPDYQDPSTYLEIIKPGGENTKTFLGFDGKENAAAEQVGLKEYAKLVDEAA
AEKTDVNKRYEKYATAQAWLTDSALLIPTTSRTGRPVLTKIVPFTAPFAWSGAKGRDMASYKYLKLQDKAVTAKEYQKAQ
EKWNKERAESNKKAQEELEKHVK

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=29089 SGO_RS08395 WP_012130757.1 1775577..1777568(-) (amiA) [Streptococcus gordonii str. Challis substr. CH1]
ATGAAGAAAGGTAAAATCCTTGCACTTGCGGGAGTTGCTCTCTTGGCTACTGGCGTTCTTGCAGCGTGCTCAAATTCTAC
ATCAAACTCATCAAACTCATCAAGCTCTGGCGCAGATCAAGTTTTTAACTATATCTACGAAGTTGATCCAGAAAACTTGA
ATTATTTGATCTCTAGTAAAGCAGCAACAACTGACCTTACAGCTAACTTGATCGATGGTCTTTTAGAAAATGACAACTAT
GGAAACTTGGTTCCATCGATGGCTGAAGATTGGACAGTGTCTAAGGATGGCTTGACTTATACTTATACACTTCGTAAGGA
TGCTAAATGGTATACTTCTGATGGTGAAGAGTATGCTGATGTCAAGGCCCAAGACTTTGTGGCAGGTCTAAAGTACGCTG
CTGACAACAAGTCTGAAACTCTTTATCTTGTTCAAAGTTCTATCAAGGGCTTGGATGACTACGTTAATGGTAAAACAAAG
GATTTCTCATCAGTTGGTGTTAAAGCAGTTGATGACCACACAGTTCAATATACTTTAAATGAGCCAGAAAGTTTCTGGAA
CTCTAAAACAACAATGGGTATCCTTTATCCAGTCAATGAAGAGTTCTTGAAGTCTAAAGGTGACAAGTTTGCTCAATCTG
CTGACCCAACTAGTCTTCTATACAACGGGCCATTCCTACTTAAATCTATCACATCTAAATCATCTATTGAATTTGCTAAA
AATCCAAATTACTGGGATAAAGATAATGTCCATGTGAGCGATGTTAAATTAACATATTTTGATGGGCAAGATCAAGGTAA
ACCAGCTGAGCAATTTGCTAAAGGTGCTCTCAGTGCAGCTAGACTAGCTCCTACAAGTGCTACCTTCTCTAAAGTCGAAA
AAGAATTCAAAGATAATATCGTTTATACTCCTCAAGATTCTACGAGCTATTTAGTTGGGGTGAACATTGATCGTCAAGCG
TACAATCACACAGCTAAATCAAGTGATGCACAAAAATCATCAACAAAGAAAGCTTTGATGAACAAAGATTTCCGTCAAGC
TTTGAGTTTTGCATTCGACAGAACGGCTTATGCTTCACAAGTTAATGGTAAAGAAGGGGCTACGAAAATGCTCCGCAATC
TCTACATTCCACCTACTTTTGTTCAGGCAGATGGTAAGAGCTTCGGCGAACTTGTGAAAGAAAAAGTGGCTAGCTATGGA
GATGAGTGGAAAGATGTAAACTTCGACGATGCTCAAGATGGCCTTTACAATAAGGAAAAAGCAAAGGCTGAATTTGCGAA
AGCTAAAAAAGCTCTTCAAGAAGAAGGTGTAGAATTCCCTATTCATTTGGATATGCCAGTAGACCAAACTGCTACTGCTA
AAGTTCAGCGTGTTCAATCTTTGAAACAATCAATTGAGAGCTCGCTTGGGACAGACAATGTGGTTGTTGACATTCATCAA
ATGAAGACTGATGATGTTTTGAACATCACCTATTATGCTGCTTCAGCTGCCGAAGAAGATTGGGATATTTCTGATAATGT
TGGTTGGTCTCCTGACTATCAAGATCCATCAACTTATCTTGAAATTATCAAGCCTGGCGGTGAAAACACCAAAACATTCT
TAGGGTTTGATGGTAAAGAAAATGCAGCTGCAGAACAAGTTGGTTTGAAGGAGTATGCTAAGCTGGTTGATGAAGCTGCC
GCTGAAAAGACAGATGTAAATAAACGCTATGAAAAATATGCAACTGCTCAAGCATGGCTAACAGATAGCGCCTTGTTGAT
ACCAACAACAAGTAGGACTGGACGTCCAGTTTTAACTAAGATTGTACCATTTACAGCTCCTTTTGCTTGGTCTGGTGCTA
AAGGTCGTGACATGGCAAGTTACAAATATCTGAAATTACAAGATAAAGCTGTCACAGCCAAAGAATATCAGAAAGCTCAA
GAAAAATGGAATAAAGAACGTGCAGAATCTAATAAAAAAGCACAAGAAGAGTTAGAAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(83-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P31306

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.301

100

0.605
  amiA3 Streptococcus thermophilus LMD-9

59.549

100

0.597
  amiA3 Streptococcus thermophilus LMG 18311

59.098

100

0.593

Multiple sequence alignment