Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SGO_RS08375 Genome accession   NC_009785
Coordinates   1771080..1772003 (-) Length   307 a.a.
NCBI ID   WP_012130756.1    Uniprot ID   A0AAQ2V108
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1766080..1777003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS08370 (SGO_1707) comR/comR1 1770396..1770878 (-) 483 WP_012130755.1 sigma-70 family RNA polymerase sigma factor Regulator
  SGO_RS08375 (SGO_1708) amiF 1771080..1772003 (-) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  SGO_RS08380 (SGO_1709) amiE 1772014..1773081 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  SGO_RS08385 (SGO_1710) amiD 1773090..1774016 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  SGO_RS08390 (SGO_1711) amiC 1774016..1775512 (-) 1497 WP_008809624.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34922.14 Da        Isoelectric Point: 6.7109

>NTDB_id=29085 SGO_RS08375 WP_012130756.1 1771080..1772003(-) (amiF) [Streptococcus gordonii str. Challis substr. CH1]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIGLNETSKGEIFFDGKQINGKKSRK
ESSEIIRKIQMIFQDPAASLNERATVDYIISEGLYNYHLFENEEERIQKVKNIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPDQHDYSVEKPEMVEIKPGHFVWANKTEVENYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=29085 SGO_RS08375 WP_012130756.1 1771080..1772003(-) (amiF) [Streptococcus gordonii str. Challis substr. CH1]
ATGTCTGAAAAATTAGTAGAAGTTAAAGATTTGGAGATTTCCTTTGGTGAAGGGAAGAAGAAATTTGTAGCTGTTAAAAA
TGCAAATTTCTTTATTAATAGAGGAGAAACTTTCTCACTCGTAGGTGAATCCGGCTCAGGGAAAACTACAATCGGTCGCG
CAATCATTGGTTTGAATGAGACGAGTAAAGGTGAAATCTTCTTTGATGGAAAGCAGATTAATGGGAAGAAGTCTAGAAAA
GAATCTTCGGAAATTATTCGTAAGATTCAAATGATATTCCAGGATCCTGCTGCGAGCTTAAACGAGCGTGCAACAGTTGA
CTATATCATTTCTGAGGGCTTGTACAACTATCACTTGTTTGAAAATGAAGAAGAAAGAATACAAAAGGTTAAAAATATTA
TTCATGAAGTTGGATTGCTTTCCGAACATTTGACGCGTTATCCGCATGAATTTTCAGGAGGACAACGTCAACGTATTGGG
ATAGCGCGCGCTTTAGTCATGCAACCAGATTTCGTTATTGCTGATGAACCAATTTCTGCTTTGGATGTATCCGTTCGTGC
TCAAGTGCTAAATCTTCTAAAGAAATTCCAAAAAGAACTGGGGTTGACCTATCTATTTATCGCTCACGATTTGTCAGTGG
TACGTTTCATTTCAGATCGTATTGCAGTAATCTATAAAGGTGTAATTGTTGAAGTAGCTGAAACGGAAGAGCTCTTTAAT
AACCCAATTCATCCTTATACCAAATCGTTATTATCAGCCGTTCCAATTCCAGATCCAATCTTAGAACGTAAAAAAGTACT
TAAAGTCTACGATCCGGATCAACATGACTATTCAGTTGAAAAACCTGAAATGGTTGAAATTAAACCTGGCCACTTTGTTT
GGGCTAACAAAACCGAAGTAGAGAACTATAAAAAAGAGCTCTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.601

99.674

0.863
  amiF Streptococcus thermophilus LMD-9

86.275

99.674

0.86
  amiF Streptococcus salivarius strain HSISS4

85.621

99.674

0.853

Multiple sequence alignment