Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SGO_RS08385 Genome accession   NC_009785
Coordinates   1773090..1774016 (-) Length   308 a.a.
NCBI ID   WP_008809623.1    Uniprot ID   -
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1768090..1779016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS08370 (SGO_1707) comR/comR1 1770396..1770878 (-) 483 WP_012130755.1 sigma-70 family RNA polymerase sigma factor Regulator
  SGO_RS08375 (SGO_1708) amiF 1771080..1772003 (-) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  SGO_RS08380 (SGO_1709) amiE 1772014..1773081 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  SGO_RS08385 (SGO_1710) amiD 1773090..1774016 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  SGO_RS08390 (SGO_1711) amiC 1774016..1775512 (-) 1497 WP_008809624.1 ABC transporter permease Regulator
  SGO_RS08395 (SGO_1712) amiA 1775577..1777568 (-) 1992 WP_012130757.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34645.61 Da        Isoelectric Point: 9.7223

>NTDB_id=29087 SGO_RS08385 WP_008809623.1 1773090..1774016(-) (amiD) [Streptococcus gordonii str. Challis substr. CH1]
MASIDKNKFQFVKRDDFASEAIDAPAYSYWRSVIRQFLKKKSTIIMLAILLTIILMSFIYPMLSDFDYNDVSKVNDFSAR
YIAPNGKYWFGTDSNGKSLFDGVWFGARNSILISVIATAINLIIGIVVGGIWGISKSVDRVMMEVYNVISNIPQLLIVIV
LTYSIGAGFWNLIFAMTITSWISIAYLIRVQIMRYRDLEYNLASRTLGTSTFKIVARNIMPQLVSVIMTTSSQMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=29087 SGO_RS08385 WP_008809623.1 1773090..1774016(-) (amiD) [Streptococcus gordonii str. Challis substr. CH1]
ATGGCTTCTATTGATAAAAATAAATTCCAATTTGTCAAACGCGATGATTTTGCCTCTGAAGCAATTGATGCTCCGGCCTA
TTCATACTGGAGATCTGTTATTCGCCAATTTCTGAAGAAGAAATCTACCATTATTATGTTGGCGATTTTGCTAACCATTA
TTTTAATGAGTTTTATTTACCCGATGTTGTCTGACTTTGATTATAACGATGTAAGTAAAGTTAATGACTTTAGTGCTCGT
TATATTGCGCCAAATGGGAAATATTGGTTTGGTACAGATAGCAATGGTAAATCTCTTTTTGATGGAGTATGGTTTGGTGC
TCGTAATTCTATCTTGATTTCCGTTATTGCGACAGCCATTAACTTGATCATTGGGATTGTTGTTGGTGGTATTTGGGGGA
TTTCCAAATCAGTTGACCGCGTTATGATGGAAGTCTATAACGTTATCTCAAATATTCCGCAATTGTTGATCGTTATTGTT
TTGACTTATTCAATCGGGGCCGGATTCTGGAATCTAATCTTTGCCATGACAATTACTTCATGGATTTCGATTGCTTACTT
AATTCGTGTACAAATCATGCGGTATCGTGATTTAGAGTACAACCTTGCCAGCCGTACTTTGGGAACGTCTACTTTTAAAA
TTGTTGCTCGAAACATTATGCCACAATTGGTATCTGTGATCATGACGACTAGCTCTCAAATGCTTCCAAGCTTTATCTCT
TATGAAGCCTTCCTTTCTTTCTTTGGTTTGGGGCTTCCAGTCACTGTGCCAAGTTTAGGGCGTTTGATTTCTGACTATTC
ACAAAACGTTACAACTAATGCTTACCTTTTCTGGATTCCATTGACAACCTTGATTTTGGTATCCTTGTCCCTTTTCATCG
TCGGACAAAATTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.143

100

0.821
  amiD Streptococcus thermophilus LMG 18311

81.169

100

0.812
  amiD Streptococcus thermophilus LMD-9

81.169

100

0.812

Multiple sequence alignment