Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SGO_RS08380 Genome accession   NC_009785
Coordinates   1772014..1773081 (-) Length   355 a.a.
NCBI ID   WP_008809622.1    Uniprot ID   A0A0F2CNN2
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1767014..1778081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS08370 (SGO_1707) comR/comR1 1770396..1770878 (-) 483 WP_012130755.1 sigma-70 family RNA polymerase sigma factor Regulator
  SGO_RS08375 (SGO_1708) amiF 1771080..1772003 (-) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  SGO_RS08380 (SGO_1709) amiE 1772014..1773081 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  SGO_RS08385 (SGO_1710) amiD 1773090..1774016 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  SGO_RS08390 (SGO_1711) amiC 1774016..1775512 (-) 1497 WP_008809624.1 ABC transporter permease Regulator
  SGO_RS08395 (SGO_1712) amiA 1775577..1777568 (-) 1992 WP_012130757.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39824.61 Da        Isoelectric Point: 4.8872

>NTDB_id=29086 SGO_RS08380 WP_008809622.1 1772014..1773081(-) (amiE) [Streptococcus gordonii str. Challis substr. CH1]
MIQNKNVILTARDIVVEFDVRDKVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEDNGRVAQGVINYRGQDL
TTLKSNKDWEKIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKDAKEAKEMAIDYMKKVGIPDAERRFEEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQNEYRFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEIFYDPRHPYTWSLLSSLPQLANDHGELFSIPGTPPSLYTELKGDAFALRSDYAMQIDFEEKAPQFQVTETHWAK
TWLLHEDAPKVHKPEIIENLHDKIRLNMGFAHLEG

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=29086 SGO_RS08380 WP_008809622.1 1772014..1773081(-) (amiE) [Streptococcus gordonii str. Challis substr. CH1]
ATGATACAAAATAAAAATGTAATATTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGATAAAGTCCTGACAGC
TATTCGTGGTGTTTCCCTTGATTTGGTTGAAGGGGAAGTATTAGCTTTGGTAGGAGAATCTGGATCAGGTAAGTCTGTGT
TGACTAAAACATTCACTGGGATGTTGGAAGATAATGGGCGCGTTGCGCAAGGTGTTATTAACTATCGTGGTCAAGATTTG
ACAACTTTAAAATCAAATAAAGATTGGGAAAAAATTCGTGGTGCTAAGATCGCTACGATTTTCCAAGATCCTATGACTAG
TTTGGATCCAATCAATACAATAGGAAGCCAAATTACTGAAGTTATTATCAAACACCAAGGCAAAGATGCAAAAGAAGCCA
AAGAAATGGCAATCGACTATATGAAAAAAGTTGGAATACCTGATGCAGAACGTCGGTTTGAAGAGTATCCTTTCCAATAT
TCTGGAGGAATGCGCCAACGTATTGTTATCGCGATTGCTCTTGCCTGTCGTCCAGATATTCTAATTTGTGATGAACCAAC
AACAGCTTTGGATGTGACAATTCAAGCACAAATTATCGAACTTTTGAAATCATTGCAGAACGAATACCGCTTTACAACTA
TATTTATCACTCATGACTTGGGTGTTGTTGCTAGTATTGCCGATAAAGTAGCGGTTATGTATGCTGGTGAGATTGTTGAA
TACGGGACGGTTGAAGAAATTTTTTACGATCCACGCCATCCTTATACATGGAGCTTGTTATCTAGCTTGCCACAGTTGGC
CAATGATCATGGTGAACTCTTCTCTATCCCAGGAACTCCTCCGTCTCTTTATACCGAGTTGAAAGGTGATGCCTTTGCTC
TTCGTTCGGATTACGCTATGCAAATTGATTTCGAAGAAAAAGCACCACAATTCCAAGTTACAGAAACTCATTGGGCTAAA
ACTTGGTTGCTTCATGAAGATGCACCAAAGGTTCACAAGCCTGAAATTATTGAAAATTTACATGATAAAATTCGCTTGAA
TATGGGCTTTGCTCATTTAGAAGGCTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2CNN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

87.252

99.437

0.868
  amiE Streptococcus thermophilus LMG 18311

85.552

99.437

0.851
  amiE Streptococcus thermophilus LMD-9

85.552

99.437

0.851
  oppD Streptococcus mutans UA159

54.155

98.31

0.532

Multiple sequence alignment