Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SGO_RS08390 Genome accession   NC_009785
Coordinates   1774016..1775512 (-) Length   498 a.a.
NCBI ID   WP_008809624.1    Uniprot ID   -
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1769016..1780512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS08370 (SGO_1707) comR/comR1 1770396..1770878 (-) 483 WP_012130755.1 sigma-70 family RNA polymerase sigma factor Regulator
  SGO_RS08375 (SGO_1708) amiF 1771080..1772003 (-) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  SGO_RS08380 (SGO_1709) amiE 1772014..1773081 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  SGO_RS08385 (SGO_1710) amiD 1773090..1774016 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  SGO_RS08390 (SGO_1711) amiC 1774016..1775512 (-) 1497 WP_008809624.1 ABC transporter permease Regulator
  SGO_RS08395 (SGO_1712) amiA 1775577..1777568 (-) 1992 WP_012130757.1 peptide ABC transporter substrate-binding protein Regulator
  SGO_RS08400 (SGO_1713) amiA 1777848..1779830 (-) 1983 WP_012130758.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55567.53 Da        Isoelectric Point: 9.9197

>NTDB_id=29088 SGO_RS08390 WP_008809624.1 1774016..1775512(-) (amiC) [Streptococcus gordonii str. Challis substr. CH1]
MKKYIFMRILRSLVSIFLVTALTYTIIYTMVPRKLIFKQDPNYNKIATTKDKKANYENTIYERMGYVDYYDTKELQEKAS
KEDSSVTVEGTDANKKIYEAYIKKLGNGWKLHQFEESKQFYAVREVPVLERVLGFYGNLIQFDHTGFVKDETNPKLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNAQFPFVHQNFVTLNLGNSYPTYANIPVLQVISQGQGQTKSSEVQFPTGKKTSSV
NIYSRTYKSPSKADSRDIANYGKDDPYTATESNYQYPSMLVSSAIIGLIGIAISYLIAVPLGSYMARFKNTWIDSSLTGL
LTFLLALPTIALVYIIRLGGSSVGLPDSFPVLGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIQGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTGLSVFALLLGD
ILMTMLDPRIKLTTKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=29088 SGO_RS08390 WP_008809624.1 1774016..1775512(-) (amiC) [Streptococcus gordonii str. Challis substr. CH1]
ATGAAGAAATATATATTTATGCGTATCTTACGCTCCCTGGTGTCGATTTTCTTAGTAACGGCTTTGACCTATACCATTAT
TTATACAATGGTGCCAAGAAAATTGATTTTTAAACAGGATCCTAACTATAACAAGATAGCAACCACAAAAGATAAAAAAG
CCAATTACGAAAACACAATCTATGAACGTATGGGCTATGTGGATTATTATGATACGAAAGAGTTACAGGAGAAAGCTAGC
AAGGAAGATAGCTCTGTAACGGTTGAAGGAACTGATGCAAACAAAAAAATCTACGAAGCTTATATCAAAAAATTAGGTAA
TGGCTGGAAGCTTCACCAGTTTGAAGAAAGTAAGCAATTTTATGCTGTTCGTGAGGTACCAGTTCTTGAACGTGTTCTTG
GCTTCTACGGAAATTTGATTCAATTTGACCATACTGGTTTTGTCAAAGATGAAACGAATCCAAAACTTAAACGTTATATT
CGTATTGAAAACGATCCAGCTATTGGTTGGTCTGTAGTTGGATCAGGTACTAAGCATAAATATTTACTATACTTTAATGC
TCAATTTCCGTTTGTTCATCAAAATTTTGTGACCTTGAACTTAGGAAATTCTTACCCAACTTATGCAAATATTCCTGTGT
TACAGGTTATTTCACAAGGGCAAGGACAAACTAAATCATCTGAGGTTCAATTCCCTACAGGAAAGAAAACTTCATCAGTT
AATATCTATTCACGTACTTACAAGTCACCAAGTAAAGCTGATTCGCGAGATATTGCAAACTATGGAAAAGATGATCCATA
TACAGCTACAGAGAGCAACTATCAATATCCATCCATGCTTGTTAGCTCAGCAATTATTGGTTTGATTGGTATTGCGATCT
CTTATCTGATTGCTGTCCCATTAGGATCTTACATGGCTCGCTTCAAAAACACTTGGATTGATAGTTCATTAACAGGTCTC
TTGACCTTCCTTTTGGCCCTGCCAACAATTGCCTTAGTTTATATTATTCGCTTAGGTGGTTCTTCGGTTGGTCTTCCAGA
TTCTTTCCCAGTTCTTGGTGCAGGAGACTGGCGTTCGTATGTTCTTCCGGCAGTTATTCTGGGACTTTTGGGGGCGCCAA
GCACAGCTATCTGGATTCGTCGTTATATGATCGACTTGCAATCCCAAGACTTTGTACGTTTTGCCCGGGCTAAAGGATTA
TCTGAAAAAGAAATTTCAAATAAACACATTTTCAAAAATGCCATGGTTCCATTGGTATCAGGAATTCCAGGAGCCGTTAT
CGGAGTTATTCAAGGGGCAACCTTGACAGAGACTGTCTTCGCCTTCCCTGGTATGGGTAAAATGTTGATCGACTCAGTTA
AAGCTTCAAATAATTCTATGGTAGTCGGATTGGTCTTCATTTTCACTGGTTTATCAGTCTTTGCCTTACTCTTAGGTGAT
ATTTTGATGACAATGCTTGACCCACGTATTAAATTAACAACAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

79.116

100

0.791
  amiC Streptococcus thermophilus LMG 18311

78.514

100

0.785
  amiC Streptococcus thermophilus LMD-9

78.313

100

0.783

Multiple sequence alignment