Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   SGO_RS07995 Genome accession   NC_009785
Coordinates   1691012..1691629 (-) Length   205 a.a.
NCBI ID   WP_256262209.1    Uniprot ID   -
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1686012..1696629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS07970 (SGO_1627) - 1686660..1687424 (-) 765 WP_012130688.1 ABC transporter ATP-binding protein -
  SGO_RS07975 (SGO_1628) - 1687424..1688377 (-) 954 WP_012130689.1 branched-chain amino acid ABC transporter permease -
  SGO_RS07980 (SGO_1629) - 1688381..1689250 (-) 870 WP_008809556.1 branched-chain amino acid ABC transporter permease -
  SGO_RS07985 (SGO_1630) - 1689409..1690575 (-) 1167 WP_012130690.1 ABC transporter substrate-binding protein -
  SGO_RS07990 (SGO_1631) - 1690665..1690934 (-) 270 WP_012130691.1 YlbG family protein -
  SGO_RS07995 (SGO_1632) clpP 1691012..1691629 (-) 618 WP_256262209.1 ATP-dependent Clp protease proteolytic subunit Regulator
  SGO_RS08000 (SGO_1633) upp 1691802..1692431 (-) 630 WP_002903228.1 uracil phosphoribosyltransferase -
  SGO_RS08005 (SGO_1634) mgtA 1692529..1695189 (-) 2661 WP_012130692.1 magnesium-translocating P-type ATPase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22424.57 Da        Isoelectric Point: 4.4473

>NTDB_id=29083 SGO_RS07995 WP_256262209.1 1691012..1691629(-) (clpP) [Streptococcus gordonii str. Challis substr. CH1]
MQLTESEKTMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSA
GLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRKTLE
QILADNSGKTVEQIHADAERDYWMSAEETLAYGFIDEIMANNNLS

Nucleotide


Download         Length: 618 bp        

>NTDB_id=29083 SGO_RS07995 WP_256262209.1 1691012..1691629(-) (clpP) [Streptococcus gordonii str. Challis substr. CH1]
ATCCAACTAACAGAAAGTGAGAAAACTATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGGGAACGTTCTTATGATAT
TTACTCACGTCTATTAAAAGATCGTATTATTATGTTGACTGGACCGGTCGAGGACAACATGGCTAATTCAGTCATTGCTC
AGCTTCTTTTCTTGGATGCACAAGATAGCACCAAGGATATCTACCTTTATGTTAATACACCAGGTGGTTCAGTCTCAGCA
GGATTGGCTATTGTTGACACCATGAACTTTATTAAATCTGATGTCCAAACAATCGTTATGGGTATGGCGGCGAGCATGGG
AACAATCATCGCATCAAGCGGTGCCAAAGGCAAACGTTTTATGCTTCCAAATGCTGAATACATGATTCACCAGCCAATGG
GAGGTACTGGTGGTGGTACTCAGCAAACGGATATGGCTATTGCTGCAGAACATTTGCTGAAGACTCGGAAAACTTTAGAG
CAAATTCTTGCTGATAATTCCGGTAAAACAGTTGAGCAAATTCATGCTGATGCAGAACGTGATTATTGGATGAGTGCTGA
AGAAACTCTTGCTTATGGATTCATTGATGAGATCATGGCTAACAATAATTTGAGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(20-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes MGAS315

92.821

95.122

0.883
  clpP Streptococcus pyogenes JRS4

92.821

95.122

0.883
  clpP Streptococcus pneumoniae D39

92.347

95.61

0.883
  clpP Streptococcus pneumoniae TIGR4

92.347

95.61

0.883
  clpP Streptococcus pneumoniae R6

92.347

95.61

0.883
  clpP Streptococcus pneumoniae Rx1

92.347

95.61

0.883
  clpP Streptococcus mutans UA159

87.745

99.512

0.873
  clpP Streptococcus thermophilus LMD-9

91.282

95.122

0.868
  clpP Streptococcus thermophilus LMG 18311

91.282

95.122

0.868
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.179

95.122

0.829
  clpP Lactococcus lactis subsp. cremoris KW2

86.667

95.122

0.824
  clpP Bacillus subtilis subsp. subtilis str. 168

57.292

93.659

0.537
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.895

92.683

0.537

Multiple sequence alignment