Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   SGO_RS03825 Genome accession   NC_009785
Coordinates   818820..819521 (+) Length   233 a.a.
NCBI ID   WP_012000241.1    Uniprot ID   -
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 813820..824521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS03805 (SGO_0775) - 814163..815476 (+) 1314 WP_012000237.1 glycosyltransferase family 4 protein -
  SGO_RS03810 (SGO_0776) - 815512..815874 (+) 363 WP_012000238.1 hypothetical protein -
  SGO_RS11035 (SGO_0777) - 816208..816579 (+) 372 WP_012000239.1 hypothetical protein -
  SGO_RS03820 (SGO_0778) thrS 816671..818614 (+) 1944 WP_012000240.1 threonine--tRNA ligase -
  SGO_RS03825 (SGO_0779) micA 818820..819521 (+) 702 WP_012000241.1 response regulator YycF Regulator
  SGO_RS03830 (SGO_0780) micB 819514..820875 (+) 1362 WP_008809003.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SGO_RS03835 (SGO_0781) vicX 820868..821671 (+) 804 WP_008809002.1 MBL fold metallo-hydrolase Regulator
  SGO_RS03840 (SGO_0782) - 821706..822062 (+) 357 WP_008809001.1 YbaN family protein -
  SGO_RS03845 (SGO_0783) rnc 822305..823003 (+) 699 WP_012000242.1 ribonuclease III -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26817.56 Da        Isoelectric Point: 4.6297

>NTDB_id=29070 SGO_RS03825 WP_012000241.1 818820..819521(+) (micA) [Streptococcus gordonii str. Challis substr. CH1]
MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLMLPELDGLEVARTIRKTSNVPIIVLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSEFAVDTQENEKGSNELTVGELQILPDAFVAKKHGEELELTH
REFELLYHLASHVGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNND

Nucleotide


Download         Length: 702 bp        

>NTDB_id=29070 SGO_RS03825 WP_012000241.1 818820..819521(+) (micA) [Streptococcus gordonii str. Challis substr. CH1]
ATGAAGAAAATATTAGTTGTAGATGATGAAAAACCAATTTCAGATATTATAAAATTTAATATGGTAAAAGAGGGCTATGA
AGTTGTTACGGCTTTTGATGGTCGTGAAGCTCTTGAGATGTTTGAAGCTGAAAATCCTGATATTTTGATTTTGGATTTGA
TGTTGCCAGAGTTGGACGGGCTAGAAGTAGCACGCACCATTCGGAAGACCAGTAATGTTCCAATTATTGTCCTATCGGCT
AAAGATAGTGAGTTTGATAAAGTTATCGGCCTTGAGATCGGAGCAGACGACTATGTGACTAAGCCTTTCTCTAACCGTGA
GCTCCAAGCTCGTGTCAAGGCTATTTTGCGACGTTCAGAATTTGCTGTAGATACCCAAGAAAATGAAAAGGGCTCAAATG
AGTTGACAGTGGGTGAATTGCAAATTTTACCCGATGCTTTTGTTGCCAAAAAACATGGTGAAGAGCTAGAATTAACCCAT
CGTGAGTTTGAATTACTCTACCATTTGGCTAGTCATGTTGGTCAAGTAATGACACGCGAACACCTGTTAGAGACAGTTTG
GGGTTATGATTATTTTGGTGATGTACGCACTGTTGATGTGACGATTCGCCGTCTACGTGAAAAGATTGAAGATACGCCAA
GCCGACCAGAGTATATTTTAACTCGTCGTGGTGTTGGCTACTATATGAGAAACAATGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

84.12

100

0.841
  vicR Streptococcus mutans UA159

80

100

0.807
  covR Lactococcus lactis subsp. lactis strain DGCC12653

45.022

99.142

0.446
  covR Streptococcus salivarius strain HSISS4

44.105

98.283

0.433
  scnR Streptococcus mutans UA159

37.5

99.571

0.373

Multiple sequence alignment